[Bioc-devel] Git pushing problems for data package

Tim Triche, Jr. t|m@tr|che @end|ng |rom gm@||@com
Sun Nov 17 22:19:15 CET 2019


This is suboptimal:

Email: tim.triche using gmail.com
GitHub Username: jamorrison

As you might imagine, I am not Jacob and Jacob is not me.  I'm wondering
how this happened?


--t


On Sun, Nov 17, 2019 at 4:17 PM Tim Triche, Jr. <tim.triche using gmail.com>
wrote:

> I went to the git login checker, and activated my (usual) maintainer
> address:
> https://git.bioconductor.org/BiocCredentials/permissions_by_user/
>
> This informed me that I have access (as tim.triche using gmail.com) to:
> 'tim.triche using gmail.com' has access to the following packages:
> methylumi
> methyAnalysis
>
> So that doesn't seem like a good thing either.  I'm getting progressively
> more confused the deeper I look :-/
>
>
> --t
>
>
> On Sun, Nov 17, 2019 at 3:46 PM Tim Triche, Jr. <tim.triche using gmail.com>
> wrote:
>
>> Actually, it seems to have somehow got worse?!
>>
>> $ cd MTseeker
>> $ git push upstream
>> FATAL: W any packages/MTseeker t.triche DENIED by fallthru
>> (or you mis-spelled the reponame)
>> fatal: Could not read from remote repository.
>>
>> Please make sure you have the correct access rights
>> and the repository exists.
>>
>> Now it seems as if all repositories are using t.triche for access
>> somehow?  Perhaps I have misconfigured something somewhere.  I will look
>> into this... but my github SSH keys are all for `ttriche` not `t.triche`.
>>
>>
>>
>> --t
>>
>>
>> On Sun, Nov 17, 2019 at 3:21 PM Tim Triche, Jr. <tim.triche using gmail.com>
>> wrote:
>>
>>> Hi Nitesh,
>>>
>>> I'm afraid that I am still getting the same problems today where it asks
>>> for authentication as "t.triche" instead of "ttriche".  Could you check
>>> into this?
>>>
>>> $ git clone git using github.com:trichelab/MTseekerData.git
>>> $ cd MTseekerData
>>> $ git remote add upstream git using git.bioconductor.org:packages/MTseekerData
>>> $ git push upstream master
>>> FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
>>> (or you mis-spelled the reponame)
>>> fatal: Could not read from remote repository.
>>>
>>> Please make sure you have the correct access rights
>>> and the repository exists.
>>>
>>> # OK, let's check:
>>>
>>> $ git clone git using git.bioconductor.org:packages/MTseekerData
>>> MTseekerData.bioc
>>> remote: Compressing objects: 100% (84/84), done.
>>> remote: Total 165 (delta 82), reused 146 (delta 70)
>>> Receiving objects: 100% (165/165), 9.93 MiB | 7.90 MiB/s, done.
>>> Resolving deltas: 100% (82/82), done.
>>>
>>> $ grep Version MTseekerData/DESCRIPTION
>>> Version: 1.5.2
>>>
>>> $ grep Version MTseekerData.bioc/DESCRIPTION
>>> Version: 1.5.0
>>>
>>> $ grep name ~/.gitconfig
>>> name = ttriche
>>>
>>> I'm out of ideas ...
>>>
>>>
>>> --t
>>>
>>>
>>> On Fri, Nov 15, 2019 at 11:09 AM Tim Triche, Jr. <tim.triche using gmail.com>
>>> wrote:
>>>
>>>> Thanks Nitesh! Not sure how that happened but thanks for fixing it.
>>>>
>>>> --t
>>>>
>>>> > On Nov 15, 2019, at 7:56 AM, Turaga, Nitesh <
>>>> Nitesh.Turaga using roswellpark.org> wrote:
>>>> >
>>>> > Hi Tim,
>>>> >
>>>> > That's because you have for some reason two different usernames with
>>>> Bioconductor.
>>>> >
>>>> > I've corrected the issue. You are now universally "ttriche" only.
>>>> >
>>>> > You should have access now.
>>>> >
>>>> > Best
>>>> >
>>>> > Nitesh
>>>> >
>>>> >> On Nov 15, 2019, at 9:52 AM, Tim Triche, Jr. <tim.triche using gmail.com>
>>>> wrote:
>>>> >>
>>>> >> Hi all,
>>>> >>
>>>> >> How do I push changes to my  MTseekerData package in git?
>>>> >>
>>>> >> I get the following error when I try to commit changes:
>>>> >>
>>>> >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git remote -v
>>>> >> origin git using github.com:trichelab/MTseekerData.git (fetch)
>>>> >> origin git using github.com:trichelab/MTseekerData.git (push)
>>>> >> upstream git using git.bioconductor.org:packages/MTseekerData (fetch)
>>>> >> upstream git using git.bioconductor.org:packages/MTseekerData (push)
>>>> >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git pull upstream
>>>> master
>>>> >> From git.bioconductor.org:packages/MTseekerData
>>>> >> * branch            master     -> FETCH_HEAD
>>>> >> Already up to date.
>>>> >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git push upstream
>>>> >> FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
>>>> >> (or you mis-spelled the reponame)
>>>> >> fatal: Could not read from remote repository.
>>>> >>
>>>> >> Please make sure you have the correct access rights
>>>> >> and the repository exists.
>>>> >>
>>>> >>
>>>> >> I do not get this problem when pushing to the MTseeker git
>>>> repository.
>>>> >>
>>>> >> Thanks for any insights,
>>>> >>
>>>> >>
>>>> >> --t
>>>> >>    [[alternative HTML version deleted]]
>>>> >>
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