[Bioc-devel] How to move package from workflow to software

[Kasper Daniel Hansen]

Without commenting on whether the move is appropriate, it should trigger a
new review process.

Best,
Kasper

On Fri, Nov 15, 2019 at 9:31 AM Julien Wollbrett <julien.wollbrett using unil.ch>
wrote:

> Hello Nitesh,
>
> Thank you for your answer.
>
> I added some functionalities to the BgeeCall package that are not
> compatible to a workflow approach.
> It is now possible to run some steps outside of the initial workflow, to
> download files from different locations, to reuse data generated by the
> user or already processed by the Bgee team, etc.
>
> Furthermore BgeeCall does not only reuse already existing bioconductor
> packages and combine them to create a workflow. It corresponds to a new
> approach allowing to generate present/absent gene expression calls from
> RNA-Seq libraries without using an arbitrary cutoff.
>
> I would be very happy if you can help me moving it to the software section.
>
> Best,
>
> Julien
>
> Le 15.11.19 à 11:59, Turaga, Nitesh a écrit :
> > Hi,
> >
> > Changing the BiocViews section in the DESCRIPTION file doesn't change
> your package from a workflow package to a software package.
> >
> > There are fundamental differences between workflow packages and software
> packages in the way we handle them within Bioconductor. Could you tell us
> why you'd like to change it from a workflow to a software package?
> >
> > The Bioc team, would have to assist in moving it to the software section.
> >
> > Best,
> >
> > Nitesh
> >
> > On 11/15/19, 4:46 AM, "Bioc-devel on behalf of Julien Wollbrett" <
> bioc-devel-bounces using r-project.org on behalf of julien.wollbrett using unil.ch>
> wrote:
> >
> >      Hello,
> >
> >      I am the maintainer of the BgeeCall R package.
> >
> >      In bioconductor 3.9 my package was registered as a workflow package.
> >      I modified my DESCRIPTION file before the release 3.10 in order to
> move
> >      the package to the software section hopping for it to automatically
> move
> >      after the new release. Unfortunately it did not work.
> >
> >      Could you please tell me how to do to move BgeeCall to the software
> section?
> >
> >      Thank you,
> >
> >      Julien
> >
> >      _______________________________________________
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> >
> >
> >
> >
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-- 
Best,
Kasper

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