[Bioc-devel] BiocManager not installing latest release version of DepecheR

[Shepherd, Lori]

It looks like you are still installing release 3.9 versions of packages.  The latest version is release 3.10.

If you do
BiocManager::version()
Does it show "3.9"  or "3.10"?

I'm betting "3.9"

You can do

BiocManager::install(version="3.10")
BiocManager::install()


To update all packages to 3.10 versions


Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Jakob Theorell <jakob.theorell using ndcn.ox.ac.uk>
Sent: Wednesday, November 13, 2019 11:06 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] BiocManager not installing latest release version of DepecheR

Dear all,
This is probably a mistake on my side, but I just now tried to install the last release version of DepecheR (for which I am the maintainer), and although the source package on BioConductor is 1.2, this is the text I get from BiocManager when installing:

Bioconductor version 3.9 (BiocManager 1.30.9), R 3.6.1 (2019-07-05)
Installing package(s) 'DepecheR'
trying URL 'https://bioconductor.org/packages/3.9/bioc/bin/macosx/el-capitan/contrib/3.6/DepecheR_1.0.3.tgz'

This is clearly the old version, that does not contain all the updates that the source package contains. Have I missed something I should have done to prevent this and what can I in that case do now?
Best regards
Jakob Theorell, MD/PhD
Autoimmune Neurology Group
Nuffield Department of Clinical Neurosciences
University of Oxford


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