[Bioc-devel] 'MoonlightR' Bioconductor package ERROR

Thu May 2 14:20:26 CEST 2019

Yes that should be a good tutorial to follow to sync to Bioconductor.  As of right now there is no RELEASE branch to sync too because the RELEASE_3_8 branch was frozen on April 15. but as of tomorrow the release branch will be RELEASE_3_9 and the devel branch is the master branch.

Cheers,

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Antonio Colaprico <antonio.colaprico using gmail.com>
Sent: Thursday, May 2, 2019 8:16:04 AM
To: Shepherd, Lori
Cc: Catharina Olsen; Morrell, Kayla; bioc-devel using r-project.org
Subject: Re: 'MoonlightR' Bioconductor package ERROR

Dear Lori,
Thank you for your prompt response. I am working on it to fix now. Quick question after that I commit to GitHub of Moonlight for syncing with Bioconductor Can I follow this tutorial ?

https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

Or there are some updates instructions?

Thank you,
best,
Antonio.

On Thu, May 2, 2019 at 7:24 AM Shepherd, Lori <Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>> wrote:

Please fix the ERROR as soon as possible to avoid potential deprecation.  We will temporarily be freezing the master (devel) branch later today (for an hour or two)  to create the new release 3.9 branch in preparation for tomorrows Bioc3.9 release.  Once this branching happens, the ERROR will need to be fixed on both of these branches once we reestablish contributors connection.

Cheers,

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Antonio Colaprico <antonio.colaprico using gmail.com<mailto:antonio.colaprico using gmail.com>>
Sent: Wednesday, May 1, 2019 9:54:22 PM
To: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>; Morrell, Kayla; Catharina Olsen; Shepherd, Lori
Subject: Re: 'MoonlightR' Bioconductor package ERROR

Dear Kayla,

thank you for writing us about the MoonlightR package.

I am one of the maintainer of the package, I got this mail from Catharina.

Please as I changed University can you update my contact mail to axc1833 using med.miami.edu<mailto:axc1833 using med.miami.edu> ?

I am currently out of the office for a conference, I will come back in Miami tomorrow.

Are we still in time to check and fix this error?

Best,

Antonio Colaprico, PhD.

-------- Original Message --------
Subject: 'MoonlightR' Bioconductor package ERROR
Date: 26.04.2019 19:19
 From: "Morrell, Kayla" <Kayla.Morrell using RoswellPark.org>
To: "colsen using ulb.ac.be<mailto:colsen using ulb.ac.be>" <colsen using ulb.ac.be<mailto:colsen using ulb.ac.be>>
Cc: "Shepherd, Lori" <Lori.Shepherd using RoswellPark.org>

The next Bioconductor release 3.9 is scheduled for May 3rd, and the last
day to commit to the devel branch is April 29th.

We like to make an effort to have all Bioconductor packages building and
checking without ERROR or TIMEOUT in the devel version. It seems your
package is still having an ERROR for all three of the platforms in the
devel version of Bioconductor. Could you please investigate this as soon
as possible.

https://www.bioconductor.org/checkResults/3.9/bioc-LATEST/MoonlightR/
[1]

If you need any assistance please feel free to ask questions at
bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>.

Thank you,

KAYLA E. MORRELL, MS

Programmer/Analyst

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

(716)845-1300 x4621
  This email message may contain legally privileged and/or confidential
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Links:
------
[1]
https://www.bioconductor.org/checkResults/3.9/bioc-LATEST/MoonlightR/

--

Antonio Colaprico, Ph.D.

Assistant Scientist (University of Miami)
Post doc researcher in Bioinformatics (Universit� Libre de Bruxelles)
Ph.D. in Bioinformatics (University of Sannio, Italy)
Telecommunications Engineer (University of Sannio,Italy)

Dr. Chen Lab
University of Miami Health System (UHealth),
Department of Public Health Sciences,
Sylvester Comprehensive Cancer Center (SCCC),
Clinical Research Building (CRB),
1120 NW 14th Street<https://maps.google.com/?q=1120+NW+14th+Street&entry=gmail&source=g>,
Office: Room 1050
33136 Miami, Florida, United States

This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
--

Antonio Colaprico, Ph.D.

Assistant Scientist (University of Miami)
Post doc researcher in Bioinformatics (Universit� Libre de Bruxelles)
Ph.D. in Bioinformatics (University of Sannio, Italy)
Telecommunications Engineer (University of Sannio,Italy)

Dr. Chen Lab
University of Miami Health System (UHealth),
Department of Public Health Sciences,
Sylvester Comprehensive Cancer Center (SCCC),
Clinical Research Building (CRB),
1120 NW 14th Street,
Office: Room 1050
33136 Miami, Florida, United States

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
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