[Bioc-devel] Unclear build failure ‘appending gaps’

[Karl Stamm]

Is there a standard system loadout I should be matching? Something must be
different between my Windows build server and the bioconductor one.
I need to reproduce the error in order to debug it, but everything is
building fine locally.

On Tue, Mar 26, 2019 at 12:21 PM Yue Zhao (Jason) <yuezh using bu.edu> wrote:

> A new error showed up: logical subscript contains NAs
>
>
> *--*
>
> *Yue (Jason) Zhao*
>
> PhD Candidate, Bioinformatics Program
>
> Boston University
>
> yuezh using bu.edu
>
>
> On Sat, Mar 23, 2019 at 11:22 AM Michael Lawrence via Bioc-devel <
> bioc-devel using r-project.org> wrote:
>
>> This is due to some buggy changes to the internals of the S4Vectors
>> package. I should be able to fix these today.
>>
>> On Sat, Mar 23, 2019 at 7:41 AM Karl Stamm <karl.stamm using gmail.com> wrote:
>>
>> > My package rgsepd has failed build recently.
>> >
>> > I don't understand the error message, and need some guidance. It says
>> Error
>> > building vignette, "appending gaps is not supported"
>> >
>> > I can't find that statement anywhere in Google, so I don't know what
>> it's
>> > referring to.  Unfortunately, my package is an automation pipeline, so
>> > there's one line of code that runs many others, and the line triggering
>> the
>> > error could represent any part of my pipeline.
>> >
>> > I've checked the build on my end before uploading code changes, so I
>> cant
>> > reproduce the error. My build was okay until very recently, I have
>> added a
>> > CITATION file which is rather lengthy, and may be impacting the vignette
>> > build?
>> >
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>> >
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>> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> >
>>
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>>
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>

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