[Bioc-devel] failed to access github, how to push updated package to the Github repository

Xinan Yang xy@ng2 @end|ng |rom uch|c@go@edu
Mon Mar 4 17:49:39 CET 2019


Thank you for the instruction. Yes, I activated my account at https://git.bioconductor.org/BiocCredentials/.

Then, I can see the seq2pathway package under the fold "which package you can access to."

But I can only do the following four modifications but not the package:

Update Email<https://git.bioconductor.org/BiocCredentials/update_email/>
Update GitHub Username<https://git.bioconductor.org/BiocCredentials/update_github_username/>
Add SSH Key<https://git.bioconductor.org/BiocCredentials/add_sshkey/>
Reset Password<https://git.bioconductor.org/BiocCredentials/password_reset/>

When I open another browser and log into github, it looks the same that

'xyang2uchicago doesn�t have any public repositories yet.'

What should I do as a next step to push the updated package?

Thank you,


From: Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org>
Sent: Monday, March 4, 2019 10:26:35 AM
To: Xinan Yang
Cc: bioc-devel using r-project.org; Jennifer Sun
Subject: Re: [Bioc-devel] failed to access github, how to push updated package to the Github repository


Firstly, you are not admin on the web app to be able to login with an �admin� account. Please try https://git.bioconductor.org/BiocCredentials/.

You have an account under the email, <xyang2 using uchicago.edu<mailto:xyang2 using uchicago.edu>>. Please try to log in and activate your account first using that email address. The link to your package is correct from our end.



On Mar 4, 2019, at 10:34 AM, Xinan Yang <xyang2 using uchicago.edu<mailto:xyang2 using uchicago.edu>> wrote:

Dear Bioconductor developers,

I tried to push an update of the existing package seq2pathway to github.   However, I did not see the package under my github account.  I also tried the following linkage (https://git.bioconductor.org/BiocCredentials/admin/login/?next=/BiocCredentials/admin/)

but ended with an error message:

'Please enter the correct email address and password for a staff account. Note that both fields may be case-sensitive.'

Will anyone tell me how to find back / creat the accessory to github in order to update my package?

Thank you,

Xinan Holly Yang
Research Assistant Professor
The University of Chicago
Section of Hematology/Oncology, Department of Pediatrics,
900 East 57th Street, KCBD Room 5121
Fax: 773/834-1329
Web: home.uchicago.edu/~/xyang2/<http://home.uchicago.edu/~/xyang2/>

From: Shepherd, Lori <Lori.Shepherd using RoswellPark.org<mailto:Lori.Shepherd using RoswellPark.org>>
Sent: Monday, March 4, 2019 6:46 AM
To: Jennifer Sun
Cc: Xinan Yang
Subject: Re: Fw: failing package seq2pathway

You can check the git credentials app


to see if you have access.

If you continue to have trouble or appear to not have access please send an email to the bioc-devel using r-project.org mailing list showing the code you have tried and requesting additional help.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Yuxi Sun <ysun11 using uchicago.edu>
Sent: Friday, March 1, 2019 5:43:01 PM
To: Shepherd, Lori
Cc: Xinan Yang
Subject: Re: Fw: failing package seq2pathway

Dear Shepherd,

We have finished debugging locally for seq2pathway. I have looked at the Github help page for pushing the changes. I am confused about how to get access to the Github repository. I assume that I need an account to get access and make changes to the repository. What exactly should I do? Thank you very much.

Best regards,

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