[Bioc-devel] Problem downloading files with GenomicDataCommons

[Sean Davis]

Hi, Koustav.

I'll take a look.

Sean


On Sun, Jun 30, 2019 at 8:48 AM Koustav Pal <koustav.pal using ifom.eu> wrote:

> Hi,
>
> I am trying to download files using the GenomicDataCommons package.
> Unfortunately, I encounter a cryptic error message most of the time.
>
> Error: '{"data": {"hits": [], "pagination": {"count": 0, "sort": "",
> "from": 0, "pages": 0, "total": 0, "page": 0, "size": 0}}, "warnings": {}}'
> does not exist in current working directory
>
> Please note, that I encounter this message 9 out of 10 times. The
> remaining 1 time,
> The file download fails with a "User token has expired error” even though
> the user
> token was downloaded 30 secs ago.
>
> I have also looked up the examples of the transfer function.
> https://bioconductor.github.io/GenomicDataCommons/reference/transfer.html
> <https://bioconductor.github.io/GenomicDataCommons/reference/transfer.html
> >
>
> Even there, this cryptic error message is found in the examples.
>
> Please note, that I am well-aware that I can provide the manifest
> to the gdc-client and I will not have to worry about it. Still,
> I would like to get to the bottom of this issue.
>
> Can someone please provide some help/insights?
>
> Koustav Pal, PhD
> Post-Doctoral Fellow in Genome Architecture,
> Computational Genomics Group,
> IFOM - The FIRC Institute of Molecular Oncology,
> Via Adamello 16,
> 20139 Milano, Italy.
> Phone: +393441130157
> E-mail: koustav.pal using ifom.eu
>
>
>
>
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>
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>


-- 
Sean Davis, MD, PhD
Center for Cancer Research
National Cancer Institute
National Institutes of Health
Bethesda, MD 20892
https://seandavi.github.io/
https://twitter.com/seandavis12

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