[Bioc-devel] get_dcf_info failed and build intervals
hp@ge@ @end|ng |rom |redhutch@org
Sat Jun 15 01:37:12 CEST 2019
On 6/14/19 15:58, Shraddha Pai wrote:
> Thanks Herve. I have actually spent weeks making sure my packages passed
> check and build following guidelines. So I am actually doing my best and
> your snarky remark is not appreciated.
OK maybe. But please note that our guidelines say that your package
should pass 'R CMD check' in less than 10 min. However in your case it
takes more than 20 min (on my laptop). This is the kind of problems that
should preferably be addressed before submission.
> Then at the very end I expanded the DESCRIPTION file by putting in line
> breaks in the "description" field, which caused the build to fail. My bad.
> Thank you for the feedback, I'm running the build on my machine to make
> sure there are no more trivial errors.
> On Fri, Jun 14, 2019 at 6:35 PM Pages, Herve <hpages using fredhutch.org
> <mailto:hpages using fredhutch.org>> wrote:
> From the Linux command line:
> git clone https://github.com/BaderLab/netDx
> R CMD INSTALL netDx
> * installing to library ‘/home/hpages/R/R-3.6.r76454/library’
> Error: error reading file '/home/hpages/sandbox/netDx/DESCRIPTION'
> R CMD build netDx
> * checking for file ‘netDx/DESCRIPTION’ ...Error : file
> '/home/hpages/sandbox/netDx/DESCRIPTION' is not in valid DCF format
> EXISTS but not correct format
> From R:
> # Error in read.dcf(path) :
> # Line starting 'The method converts ...' is malformed!
> How about making sure that your package is valid before submitting?
> On 6/14/19 15:14, Shraddha Pai wrote:
> > Hello BioC dev community,
> > I just submitted a package to BioC.
> > 1) The automatic build gave it an "ABNORMAL" status with the
> > error " Accessing git_info complete. get_dcf_info failed; could
> not open."
> > I've Googled a bit and cannot find the solution for what this
> error means
> > and how to address it. Can someone please help me?
> > 2) The package above was an AdditionalPackage to a companion
> dataset. The
> > first build on the initial dataset package resulted in an error.
> I address
> > the error and pushed a git commit 2-3 hours ago, but haven't seen
> a second
> > build attempt in response to that push. How often are builds
> > Obviously it would be great to do a series of builds and fix
> errors in a
> > short span of time.
> > 3) Also how can I search the bioc-devel mailing list?
> > I only see this archive page:
> > My apologies if these are trivial questions.
> > Thanks very much,
> > Shraddha
> Hervé Pagès
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
> E-mail: hpages using fredhutch.org <mailto:hpages using fredhutch.org>
> Phone: (206) 667-5791
> Fax: (206) 667-1319
> Shraddha Pai
> Post-doctoral Fellow, http://baderlab.org
> The Donnelly Center, University of Toronto
> @spaiglass on Twitter
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages using fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
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