[Bioc-devel] tokay1 C++14 compiler

[Kasper Daniel Hansen]

What's weird here is that you supposedly depend on rstan which also
requires a C++14. How can the build system have that package installed
without having a compliant compiler?


On Thu, Jul 25, 2019 at 12:05 PM Simo Kitanovski <simo.kitanovski using uni-due.de>
wrote:

> Hello Bioconductor community,
>
> I maintain the Bioconductor package genphen which depends on rstan for
> MCMC sampling. To build the package one needs a C++14 compiler.
>
> I have no problem building the package on malbec1 and merida1, but not
> on tokay1. Any idea of what might have gone wrong on this server and how
> to use C++14? I have submitted a new package (IgGeneUsage) which also
> uses rstan and have the same problem (see build report below).
>
> BTW: why do we see this under the C++14 compiler box for tokay1:
> Compiler version (' --version' output):
> '--version' is not recognized as an internal or external command,
> operable program or batch file.
>
> Any ideas?
>
> Best
>
> ===============================
>
>   R CMD BUILD
>
> ===============================
> * checking for file 'IgGeneUsage/DESCRIPTION' ... OK
> * preparing 'IgGeneUsage':
> * checking DESCRIPTION meta-information ... OK
> * cleaning src
> * installing the package to build vignettes
>        -----------------------------------
> * installing *source* package 'IgGeneUsage' ...
> ** using staged installation
> ** libs
> Error in .shlib_internal(args) :
>    C++14 standard requested but CXX14 is not defined
> * removing
>
> 'C:/Users/pkgbuild/AppData/Local/Temp/RtmpUDyHnY/Rinst315c22dc5ac/IgGeneUsage'
>        -----------------------------------
> ERROR: package installation failed
>
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>


-- 
Best,
Kasper

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