[Bioc-devel] Travis CI errors for BiocManager

[Erik Fasterius]

Ah, okey! Very good to know, thank you! Is there a way I can keep track of this, to see when it gets fixed?

Erik

> On 3 Jan 2019, at 14:00, Martin Morgan <mtmorgan.bioc using gmail.com> wrote:
> 
> This seems to be a regression in R-devel, and has been reported.
> 
> Previously (at least svn r75833, I think)
> 
>  df <- data.frame(vers= package_version("1.2"))
>  rbind(df, df)$vers
> 
> returned
> 
>  [1] '1.2' '1.2'
> 
> now (r75945) we have
> 
>> rbind(df, df)$vers
> [[1]]
> [1] 1 2
> 
> [[2]]
> [1] 1 2
> 
> Martin
> 
> On 1/3/19, 5:25 AM, "Bioc-devel on behalf of Erik Fasterius" <bioc-devel-bounces using r-project.org on behalf of erik.fasterius using outlook.com> wrote:
> 
>    Hi,
> 
>    I’m currently updating my package `seqCAT` with some new code, and I always run it through Travis CI before pushing changes to Bioconductor. The last build errors with the following message:
> 
>    Updating HTML index of packages in '.Library'
>    Making 'packages.html' ... done
>    Error: invalid version specification ‘c(3, 9)’
>    Execution halted
>    The command "eval Rscript -e 'if (!requireNamespace("BiocManager", quietly=TRUE))  install.packages("BiocManager");if (TRUE) BiocManager::install(version = "devel");cat(append = TRUE, file = "~/.Rprofile.site<http://Rprofile.site>", "options(repos = BiocManager::repositories());")' " failed.
> 
>    This happens even though both `devtools::check()` and `BiocCheck()` completes without errors, like normal. I have never had this error before, and it started with the most recent change I did: `n()` to `dplyr::n()` in a single line of code (to account for the upcoming changes to the `dplyr` package), so I don’t believe the code itself is to blame.
> 
>    Does anybody know what the problem is here?
>    Thanks in advance!
>    Erik
> 
>    	[[alternative HTML version deleted]]
> 
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