[Bioc-devel] github bridge to bioconductor

[Karl Stamm]

Wow that was easy. Thanks Nitesh.

 git push upstream master
Counting objects: 20, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (20/20), done.
Writing objects: 100% (20/20), 5.33 KiB | 1.33 MiB/s, done.
Total 20 (delta 14), reused 0 (delta 0)
To git.bioconductor.org:packages/rgsepd
   4715839..b7aad7a  master -> master

 I didn't find that command in the half-dozen different bioconductor
developers tutorials, and 'git push' just kept telling me everything was up
to date. I started this package a few years ago when Bioc used SVN, and
have been confused ever since they moved to git and recommended I make a
github account.
Looking forward to seeing tonight's build report.


On Wed, Jan 2, 2019 at 9:55 AM Turaga, Nitesh <Nitesh.Turaga using roswellpark.org>
wrote:

> There is no bridge between GitHub and Bioconductor’s private git server.
>
> You have to push separately to the Bioconductor’s git server. Based on
> your setup, you have to do,
>
>         git push upstream master
>
> which, pushes to git using git.bioconductor.org:packages/rgsepd.
>
> Please let me know if you have done this.
>
> Once you have done this, check https://bioconductor.org/developers/gitlog/
> to see if you commit is available on that list.
>
> Best,
>
> Nitesh
>
>
>
> > On Jan 2, 2019, at 10:49 AM, Karl Stamm <karl.stamm using gmail.com> wrote:
> >
> > I think there's a disconnect between the github and the bioconductor
> build
> > server. I cannot seem to get any updates to go into the Bioc devel
> > packages.
> > I have added a few things to v1.15.x and the Bioc website still lists me
> as
> > 1.15.0.
> > I have the workstation set up as such
> >
> > git remote -v
> >
> > origin git using github.com:kstammits/rgsepd.git (fetch)
> >
> > origin git using github.com:kstammits/rgsepd.git (push)
> >
> > upstream git using git.bioconductor.org:packages/rgsepd (fetch)
> >
> > upstream git using git.bioconductor.org:packages/rgsepd (push)
> >
> > and it claims 'everything is up to date' when I try to push. Github shows
> > my changes, but they arent going into Bioc.  How can I get the two
> > connected?
> >
> > Thanks.
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.

	[[alternative HTML version deleted]]