[Bioc-devel] Changes not applied in bioc source

Turaga, Nitesh N|te@h@Tur@g@ @end|ng |rom Ro@we||P@rk@org
Thu Dec 5 19:18:30 CET 2019

Hi Vinh,

I checked the installation from BiocManager. It seems the same version 1.1.2 is being installed by BiocManager as well as from the Bioconductor git repo.

Can you tell me how to test for this bug? I just ran the vignette but don't see an error.

It will be more helpful for us to debug this if you let me know how to reproduce the issue you are seeing. Or copy paste the issue at least. 



> On Dec 5, 2019, at 12:22 PM, Vinh Tran <tran using bio.uni-frankfurt.de> wrote:
> Dear Bioc Team,
> I am maintainer of the PhyloProfile package. Last week I made a bug fixed
> for the package and push it into both release_3_10 as well as the master
> (development) branch. The build and check for both PR were successful and I
> can see the new source files with the correct version numbers in the
> corresponding bioc sites. But, it seems that, the bug is still there. I
> checked with BiocManager::install() as well as installed from the source
> files downloaded from both Bioc 3.10 and 3.11. However, the code run
> correctly when I installed the package from the github repo (with both dev
> and release branches), which is linked to the bioc git.
> Could you explain me what is happening? Many thanks!
> Best regards,
> Vinh
> --------------------------------
> Dr. Vinh Tran
> Dept. for Applied Bioinformatics
> Inst. for Cell Biology and Neuroscience
> Goethe University Frankfurt
> Biologicum, Room 3.209
> Phone +49 (0)69/798-42118
> 	[[alternative HTML version deleted]]
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