[Bioc-devel] BiocCheck error

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Tue Aug 20 18:15:41 CEST 2019

I think this is from BiocCheck, needing access to CRAN / Bioconductor to look at package status. Likely there are issues accessing these sites (BiocManager::repositories()) from your computer. It seems not to be an issue that you as developer need to worry about, provided you are confident that you are using current packages.


On 8/20/19, 12:04 PM, "Bioc-devel on behalf of Zhezhen Wang" <bioc-devel-bounces using r-project.org on behalf of zhezhen using uchicago.edu> wrote:

    The github repo is https://github.com/xyang2uchicago/NPS
    From: Vincent Carey <stvjc using channing.harvard.edu>
    Sent: Tuesday, August 20, 2019 10:52 AM
    To: Zhezhen Wang <zhezhen using uchicago.edu>
    Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
    Subject: Re: [Bioc-devel] BiocCheck error
    If your package that generates the error is in a github repo, please give the details.
    If it is already in Bioconductor please give the name of the package and ensure we can
    get access to the code that is generating the error.  In general it is very hard to help unless
    we can reproduce the error you report.
    On Tue, Aug 20, 2019 at 11:38 AM Zhezhen Wang <zhezhen using uchicago.edu<mailto:zhezhen using uchicago.edu>> wrote:
    Hi I am running BiocCheck on my new package and I get the following error message
      *   Checking for deprecated package usage... Warning in readLines(file, skipNul = TRUE) : InternetOpenUrl failed: 'The server name or address could not be resolved' Error in readLines(file, skipNul = TRUE) : cannot open the connection
    May I know what this error message means and how I can correct it?
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