[Bioc-devel] erro in package build
hp@ge@ @end|ng |rom |redhutch@org
Tue Aug 13 21:56:20 CEST 2019
As you can see on our build/check report, what is broken is 'R CMD
INSTALL Mulcom'. The problem is easy to reproduce:
hpages using spectre:~$ git clone
https://git.bioconductor.org/packages/MulcomCloning into 'Mulcom'...
remote: Enumerating objects: 570, done.
remote: Counting objects: 100% (570/570), done.
remote: Compressing objects: 100% (555/555), done.
remote: Total 570 (delta 343), reused 0 (delta 0)
Receiving objects: 100% (570/570), 4.87 MiB | 2.03 MiB/s, done.
Resolving deltas: 100% (343/343), done.
Checking connectivity... done.
hpages using spectre:~$ R CMD INSTALL Mulcom
* installing to library ‘/home/hpages/R/R-3.6.r76454/library’
* installing *source* package ‘Mulcom’ ...
** using staged installation
** byte-compile and prepare package for lazy loading
*** installing help indices
** building package indices
** installing vignettes
Warning in file(con, "w") :
cannot open file
No such file or directory
Error in file(con, "w") : cannot open the connection
ERROR: installing vignettes failed
* removing ‘/home/hpages/R/R-3.6.r76454/library/Mulcom’
* restoring previous ‘/home/hpages/R/R-3.6.r76454/library/Mulcom’
What seems to cause this is the presence of things in your package
source tree that don't belong there. These things are the build/
folder and the src/symbols.rds file. Remove them and the problem will
Please refer to the "Package structure" subsection of the "Writing R
for more information about how to maintain
a valid package source tree.
Hope this helps.
On 7/16/19 01:04, Claudio Isella wrote:
> dear all,
> I am experiencing problem in generating a packages suitable for bioconductor repositories.
> I checked locally and both build and check runs properly, however when the package is pushed on the git server I received this error.
> can you help me?
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