[Bioc-devel] Error when building BgeeCall package on Mac OS

[Julien Wollbrett]

Hello,

My package (called BgeeCall) is under review and passed R CMD Build and 
R CMD Check for Linux and windows.

I still have an error on Mac. I tried to reproduce it using different 
versions of R (3.5 and 3.6) and different OS

versions (Sierra and El Capitan). I tried on 5 different computers but 
still not able to reproduce this error.

Does anyone have any idea on the origin of this error ? What should I 
try to do to solve it?

dyld: Library not loaded: @rpath/libz.1.dylib
   Referenced from: /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto
   Reason: image not found
Will run kallisto using this command line : /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto quant -i /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/intergenic_0.1/6239/kallisto/transcriptome_WBcel235/transcriptome.idx -o /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/intergenic_0.1/6239/kallisto/transcriptome_WBcel235/annotation_WBcel235_84/SRX099901_subset -t 1 --single -l 180 -s 30 --bias  /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rinst1406e55617de6/BgeeCall/extdata/SRX099901_subset/SRR350955_subset.fastq.gz
dyld: Library not loaded: @rpath/libz.1.dylib
   Referenced from: /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto
   Reason: image not found

You can access to the submission issue here :

https://github.com/Bioconductor/Contributions/issues/1002

Thank you for your answers.


Julien Wollbrett


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