[Bioc-devel] DMCHMM package new dev release

[Shepherd, Lori]

We now see the changes on the git.bioconductor.org server.  The changes should be reflected in tomorrows build report.


Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Farhad Shokoohi <shokoohi using icloud.com>
Sent: Wednesday, September 5, 2018 9:46:21 AM
To: Shepherd, Lori
Cc: Obenchain, Valerie; bioc-devel using r-project.org
Subject: Re: [Bioc-devel] DMCHMM package new dev release

Hello,

I followed every command.
Everything is up to date.



MacBook-Pro:DMCHMM Farhad$ git remote add upstream git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/DMCHMM.git
fatal: remote upstream already exists.
MacBook-Pro:DMCHMM Farhad$ git fetch --all
Fetching origin
Fetching upstream
MacBook-Pro:DMCHMM Farhad$ git checkout master
Switched to branch 'master'
Your branch is up-to-date with 'origin/master'.
MacBook-Pro:DMCHMM Farhad$
MacBook-Pro:DMCHMM Farhad$ git merge origin/master
Already up-to-date.
MacBook-Pro:DMCHMM Farhad$ git merge upstream/master
Already up-to-date.
MacBook-Pro:DMCHMM Farhad$ git push upstream master
Everything up-to-date
MacBook-Pro:DMCHMM Farhad$ git push origin master
Everything up-to-date



���
Farhad Shokoohi,
Ph.D. in Statistics
shokoohi using icloud.com<mailto:shokoohi using icloud.com>

On Sep 5, 2018, at 9:33 AM, Shepherd, Lori <Lori.Shepherd using RoswellPark.org<mailto:Lori.Shepherd using RoswellPark.org>> wrote:

If you didn't set up your remotes  this link may be useful

https://bioconductor.org/developers/how-to/git/sync-existing-repositories/



Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Shepherd, Lori
Sent: Wednesday, September 5, 2018 9:32:08 AM
To: Obenchain, Valerie; Farhad Shokoohi
Subject: Re: [Bioc-devel] DMCHMM package new dev release

You need to commit changes to git.bioconductor.org<http://git.bioconductor.org> .  There are no changes pushed to our Bioconductor server.

Please ensure you have followed the instructions for setting up your remotes and pushed to the correct location
https://bioconductor.org/developers/how-to/git/push-to-github-bioc/

I would keep track of the commands you try and if you get any ERRORs please post the commands with full output as a reply all.


Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Farhad Shokoohi via Bioc-devel <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
Sent: Wednesday, September 5, 2018 9:26:58 AM
To: Obenchain, Valerie
Cc: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] DMCHMM package new dev release

Hello,

I did everything mentioned in the link.
I am also using Sourcetree app on Mac to commit changes but noting changes.

Best,
���
Farhad Shokoohi,
Ph.D. in Statistics
shokoohi using icloud.com<mailto:shokoohi using icloud.com>

> On Sep 4, 2018, at 11:59 AM, Obenchain, Valerie <Valerie.Obenchain using RoswellPark.org> wrote:
>
> The builds start ~5pm EST daily. Commits made before that time will be included in the nightly builds. The build report posts the following day (see time at top of page):
>
> https://www.bioconductor.org/checkResults/release/bioc-LATEST/ <https://www.bioconductor.org/checkResults/release/bioc-LATEST/>
> https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/>
>
> If you don't see the package version you expected it's likely you missed the cutoff or didn't push to the git.bioconductor.org server. See git documentation here:
>
> https://www.bioconductor.org/developers/how-to/git/ <https://www.bioconductor.org/developers/how-to/git/>
>
> Valerie
>
>
> On 09/04/2018 07:58 AM, Farhad Shokoohi via Bioc-devel wrote:
>> Hello,
>>
>> I have made some changes and updated my package DMCHMM and pushed it to GitHub.
>> When the new update appears on bioconductor?
>>
>> Best,
>>
>> ���
>> Farhad Shokoohi,
>> Ph.D. in Statistics
>>
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>>
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