[Bioc-devel] DMCHMM package new dev release

[Farhad Shokoohi]

Hello,

I followed every command. 
Everything is up to date. 



MacBook-Pro:DMCHMM Farhad$ git remote add upstream git using git.bioconductor.org:packages/DMCHMM.git
fatal: remote upstream already exists.
MacBook-Pro:DMCHMM Farhad$ git fetch --all
Fetching origin
Fetching upstream
MacBook-Pro:DMCHMM Farhad$ git checkout master
Switched to branch 'master'
Your branch is up-to-date with 'origin/master'.
MacBook-Pro:DMCHMM Farhad$ 
MacBook-Pro:DMCHMM Farhad$ git merge origin/master
Already up-to-date.
MacBook-Pro:DMCHMM Farhad$ git merge upstream/master
Already up-to-date.
MacBook-Pro:DMCHMM Farhad$ git push upstream master
Everything up-to-date
MacBook-Pro:DMCHMM Farhad$ git push origin master
Everything up-to-date



———
Farhad Shokoohi, 
Ph.D. in Statistics
shokoohi using icloud.com

> On Sep 5, 2018, at 9:33 AM, Shepherd, Lori <Lori.Shepherd using RoswellPark.org> wrote:
> 
> If you didn't set up your remotes  this link may be useful
> 
> https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ <https://bioconductor.org/developers/how-to/git/sync-existing-repositories/>
> 
> 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Cancer Institute
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Shepherd, Lori
> Sent: Wednesday, September 5, 2018 9:32:08 AM
> To: Obenchain, Valerie; Farhad Shokoohi
> Subject: Re: [Bioc-devel] DMCHMM package new dev release
>  
> You need to commit changes to git.bioconductor.org .  There are no changes pushed to our Bioconductor server. 
> 
> Please ensure you have followed the instructions for setting up your remotes and pushed to the correct location
> https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ <https://bioconductor.org/developers/how-to/git/push-to-github-bioc/>
> 
> I would keep track of the commands you try and if you get any ERRORs please post the commands with full output as a reply all. 
> 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Cancer Institute
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Farhad Shokoohi via Bioc-devel <bioc-devel using r-project.org>
> Sent: Wednesday, September 5, 2018 9:26:58 AM
> To: Obenchain, Valerie
> Cc: bioc-devel using r-project.org
> Subject: Re: [Bioc-devel] DMCHMM package new dev release
>  
> Hello,
> 
> I did everything mentioned in the link. 
> I am also using Sourcetree app on Mac to commit changes but noting changes. 
> 
> Best,
> ———
> Farhad Shokoohi, 
> Ph.D. in Statistics
> shokoohi using icloud.com
> 
> > On Sep 4, 2018, at 11:59 AM, Obenchain, Valerie <Valerie.Obenchain using RoswellPark.org> wrote:
> > 
> > The builds start ~5pm EST daily. Commits made before that time will be included in the nightly builds. The build report posts the following day (see time at top of page):
> > 
> > https://www.bioconductor.org/checkResults/release/bioc-LATEST/ <https://www.bioconductor.org/checkResults/release/bioc-LATEST/> <https://www.bioconductor.org/checkResults/release/bioc-LATEST/ <https://www.bioconductor.org/checkResults/release/bioc-LATEST/>>
> > https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/> <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/>>
> > 
> > If you don't see the package version you expected it's likely you missed the cutoff or didn't push to the git.bioconductor.org server. See git documentation here:
> > 
> > https://www.bioconductor.org/developers/how-to/git/ <https://www.bioconductor.org/developers/how-to/git/> <https://www.bioconductor.org/developers/how-to/git/ <https://www.bioconductor.org/developers/how-to/git/>>
> > 
> > Valerie
> > 
> > 
> > On 09/04/2018 07:58 AM, Farhad Shokoohi via Bioc-devel wrote:
> >> Hello,
> >> 
> >> I have made some changes and updated my package DMCHMM and pushed it to GitHub. 
> >> When the new update appears on bioconductor?
> >> 
> >> Best,
> >> 
> >> ———
> >> Farhad Shokoohi, 
> >> Ph.D. in Statistics
> >> 
> >>       [[alternative HTML version deleted]]
> >> 
> >> _______________________________________________
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> >> 
> > 
> > 
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