[Bioc-devel] choosing R version dependency for existing packages
Paul Shannon
p@ul@thurmond@@h@nnon @ending from gm@il@com
Sat Nov 3 20:27:25 CET 2018
Thanks, Martin.
I have backed off MotifDB’s R requirement to 3.5.0. I will experiment with removing the requirement entirely in the new devel branch.
- Paul
> On Nov 3, 2018, at 1:37 AM, Martin Morgan <mtmorgan.bioc using gmail.com> wrote:
>
> If users are 'playing by the books' and using BiocManager::install(), the version of R is coupled with the version of Bioconductor / your package, so specifying an R version is irrelevant. In addition, saying your package has a dependency R >=... implies that there will be no breaking changes in some future R, which requires a certain amount of foresight. And using R itself would seem to be a requirement for an R package. So in principle my feeling is that it doesn't make sense to include R or an R version as a dependency.
>
> In a more practical setting it might be that your package depends on a specific feature of R, or that you yourself are only confident that a particular version of R will provide the needs of your package. It might then be appropriate to specify that R version. Again in the domain of the ideal, new R features would be introduced in R-devel, with bug fixes only in the point releases. So a dependency like R >= 3.5.0 would seem appropriate.
>
> I'm not sure whether these comments are helpful or not... __
>
> Martin
>
> On 11/2/18, 3:19 PM, "Bioc-devel on behalf of Paul Shannon" <bioc-devel-bounces using r-project.org on behalf of paul.thurmond.shannon using gmail.com> wrote:
>
> A user of MotifDb requests - sensibly, I think - that I loosen the requirement
>
> Depends: R (>= 3.5.1)
>
> which I added before the release. This seems sensible and supported by, for example, R (>= 2.10) in GenomicRanges.
>
> Is this, then, the heuristic?
>
> - new packages should depend on the lastest release of R
>
> - older existing packages should depend on earlier
> versions of R, possibly sticking with the version of R in
> which they originally appeared, as long as they have not
> been subsequently modified to use new R features.
>
> - Paul
>
>
>
>
>
>
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
More information about the Bioc-devel
mailing list