[Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

[Christopher John]

Hi

I also have a warning after the upgrade, just for the development version
(I have not changed).

I am not sure why this happened as I can't find the ape in the namespace
and previously had no warning before upgrade.

Thanks.

* checking whether package ‘M3C’ can be installed ... WARNING
Found the following significant warnings:
  Warning: S3 method ‘ape::as.phylo.dendrogram’ was declared in
NAMESPACE but not found
See ‘/Users/biocbuild/bbs-3.9-bioc/meat/M3C.Rcheck/00install.out’ for details.


On Thu, 1 Nov 2018 at 08:09, Jakob Willforss <jakob.willforss using immun.lth.se>
wrote:

> Hi! Getting closer to release, exciting!
>
> Today I saw that the build for my package NormalyzerDE gave a warning
> after the release version bumps,
> but only on the Windows build machine. No code has been changed from
> previously succeeding builds.
>
> It seems to be unable to find certain functions in the libraries xts and
> ggplot2 (see warning below). It seems to build fine on the Ubuntu and Mac
> machines.
>
> Do you think this is something to worry about, or is it likely to be
> something temporary to the build machines? I wonder in particular as my
> work environment (and debugging environment of choice) is Linux, where the
> problem don't seem to be reproduced.
>
> Best wishes,
> Jakob
>
> The warning:
>
> * checking whether package ‘NormalyzerDE’ can be installed ... WARNING
> Found the following significant warnings:
>   Warning: S3 method ‘xts::as.xts.data.table’ was declared in NAMESPACE
> but not found
>   Warning: S3 methods ‘ggplot2::autoplot.zoo’, ‘ggplot2::fortify.zoo’ were
> declared in NAMESPACE but not found
> See ‘/Users/biocbuild/bbs-3.9-bioc/meat/NormalyzerDE.Rcheck/00install.out’
> for details.
>
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