[Bioc-devel] build report repeating the same error

[Sara Linker]

Hi at bioc-devel,

I’ve tried a few times now to update the error reported in the build report. I’ve pushed the fix to GitHub and bumped the version number, but the same error message keeps coming back. Does anyone know how to fix this? I feel like a reboot of some kind is needed.

ERROR MESSAGE:


> ### ** Examples
>
> comp <- methods::new(Class="Comp",
+ tissueExp1 = c(10,12),
+ tissueExp2 =  table(c(rep("A",5), rep("B",5))),
+ composite = matrix(0,nrow=10,ncol=10),
+ random.matrix = data.frame(matrix(0,nrow=10,ncol=10)),
+ refset = "developing"
+ )
Error in validObject(.Object) :
  invalid class "Comp" object: invalid object for slot "tissueExp2" in class "Comp": got class "table", should be or extend class "numeric"
Calls: <Anonymous> -> initialize -> initialize -> validObject
Execution halted

BUT I’ve fixed this and my current code (on GitHub) now reads…
#' @examples
#' comp <- methods::new(Class="Comp",
#' tissueExp1 = c(10,12),
#' tissueExp2 =  c(10,13),
#' composite = matrix(0,nrow=10,ncol=10),
#' random.matrix = data.frame(matrix(0,nrow=10,ncol=10)),
#' refset = "developing"
#' )

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