[Bioc-devel] build cache on bioconductor build system?

Martin Morgan m@rtin@morg@n @ending from ro@wellp@rk@org
Wed May 30 16:04:32 CEST 2018

There is no cache; like users you get the 'current' version of the 
package from the relevant repository. If your package used 
concatenateObjects, then it needs to be updated. If your package is 
broken through a third package, it needs to be fixed (perhaps it has 
been but did not propagate, see the build reports for packages in the 
devel branch http://bioconductor.org/checkResults/ , and look for the 
stoplight at the right).


On 05/30/2018 09:56 AM, Vivek Bhardwaj wrote:
> Hi All
> Is there any build cache on bioc build system? I updated S4Vector and
> IRanges in my dependencies and triggered a new build of my package, only
> to find that this broke other dependencies due to renaming of function
> `concatenateObjects ` to `bindRows` in S4Vector. Now I removed the
> mentioned versions in my DESCRIPTION, but the build is still broken.
> Also tried specifying a particular version of these packages and I get
> the error :
> ** byte-compile and prepare package for lazy loading Error in
> loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
> vI[[j]]) : namespace 'IRanges' 2.15.13 is already loaded, but == 2.14.10
> is required
> How do I refresh the cache?

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