[Bioc-devel] FW: GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6

Zhu, Lihua (Julie) Julie.Zhu at umassmed.edu
Wed Mar 28 22:23:10 CEST 2018


I am trying to fix the following error in the released version by adding the correct encoding in the DESCRIPTION file. However, I encountered the following message. Could you please help? Thanks!

Best regards,


git push upstream RELEASE_3_6

Counting objects: 401, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (135/135), done.
Writing objects: 100% (401/401), 103.37 MiB | 15.55 MiB/s, done.
Total 401 (delta 294), reused 355 (delta 257)
remote: Resolving deltas: 100% (294/294), completed with 23 local objects.
remote: Error: duplicate commits.
remote: There are duplicate commits in your commit history, These cannot be
remote: pushed to the Bioconductor git server. Please make sure that this is
remote: resolved.
remote: Take a look at the documentation to fix this,
remote: https://bioconductor.org/developers/how-to/git/sync-existing-repositories/,
remote: particularly, point #8 (force Bioconductor master to Github master).
remote: For more information, or help resolving this issue, contact
remote: <bioc-devel at r-project.org>. Provide the error, the package name and
remote: any other details we might need.
remote: Use
remote:     git show c2479629841859aaa49b97f391bfe593555e0f01
remote:     git show 1d6bbf4039de44f8692dcecb6f160d32332375a7
remote: to see body of commits.
To git.bioconductor.org:packages/GUIDEseq.git
 ! [remote rejected] RELEASE_3_6 -> RELEASE_3_6 (pre-receive hook declined)
error: failed to push some refs to 'git at git.bioconductor.org:packages/GUIDEseq.git'

On 3/28/18, 3:10 PM, "BBS-noreply at bioconductor.org" <BBS-noreply at bioconductor.org> wrote:

    [This is an automatically generated email. Please don't reply.]
    Hi GUIDEseq maintainer,
    According to the Multiple platform build/check report for BioC 3.6,
    the GUIDEseq package has the following problem(s):
      o ERROR for 'R CMD INSTALL' on malbec1. See the details here:
      o ERROR for 'R CMD build' on malbec1. See the details here:
    Please take the time to address this by committing and pushing
    changes to your package at https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=FzPy60AJ_IqYrWU_CO1n-OssQeuoyFUlKnoiJusbaRM&e=
      * This was the status of your package at the time this email was sent to you.
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        could see something different when you visit the URL(s) above, especially if
        you do so several days after you received this email.
      * It is possible that the problems reported in this report are false positives,
        either because another package (from CRAN or Bioconductor) breaks your
        package (if yours depends on it) or because of a Build System problem.
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