[Bioc-devel] SVN to GIT

Tue Mar 13 15:22:26 CET 2018

Thanks Nitesh.

Nicolas, it looks like you're having problems generating a valid key. There are a couple of  options.

1) Generate a key with ssh-keygen. Check the validity of the key with ssh-keygen -lf. Do not submit the key to the google form unless the output indicates it's a valid key.

2) Upload your key to your nservant github account. The upload won't succeed unless you have a valid key so this will serve as a good check. Once the key is in github.com/nservant.keys register with the google form. User n.servant as your ID but instead of supplying an SSH key supply your github username. We'll get the key automatically from there.

Instructions for adding a SSH key to github:

  https://help.github.com/articles/adding-a-new-ssh-key-to-your-github-account/

Valerie

On 03/13/2018 06:58 AM, Turaga, Nitesh wrote:

Hi Val,

Just checked Nicholas� key, but I think his key is bad (spaces). Either way,

        ssh-keygen -l -f <key>

does not validate.

On Mar 13, 2018, at 8:48 AM, Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org><mailto:Valerie.Obenchain at RoswellPark.org> wrote:

Nitesh,

Were the submitted keys invalid? Any idea why Nicolas didn't received an email?

Val

On 03/13/2018 02:37 AM, Servant Nicolas wrote:

Dear Valerie,

I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes.
Anything else I can do ?
Thank you
Nicolas

Le 09/03/2018 � 18:15, Obenchain, Valerie a �crit :

Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not.

Valerie

On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:

Nicolas,

You  need to follow instructions to submit an SSH key:

  https://bioconductor.org/developers/how-to/git/maintain-github-bioc/

Specifically, you need to fill out this form using n.servant as your username:

  https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform

Valerie

On 03/09/2018 08:47 AM, Servant Nicolas wrote:

Thank you very much.
The point is that I cannot checkout because I guess BioC does not know
my SSH keys.

 >>git clone
git at git.bioconductor.org:packages/HiTC<mailto:git at git.bioconductor.org:packages/HiTC>

Cloning into 'HiTC'...
Permission denied (publickey).
fatal: Could not read from remote repository.

How can I fix this ?
Thanks

Le 09/03/2018 � 17:43, Turaga, Nitesh a �crit :

http://bioconductor.org/developers/how-to/git/

On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr><mailto:nicolas.servant at curie.fr>
 wrote:

Can anyone help me ?
If you have any links or tutorial, it would be useful.
Thanks

Le 06/03/2018 � 10:04, Servant Nicolas a �crit :

Dear all,

I try a couple of weeks ago to move to git to maintain the HiTC package,
but I did not succeed.
I followed the guidelines here ;

https://bioconductor.org/developers/how-to/git/maintain-github-bioc/

But when I try to fetch the BioC repo, it does not work

$ git fetch upstream
The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be
established.
ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q.
Are you sure you want to continue connecting (yes/no)? yes
Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA)
to the list of known hosts.
Permission denied (publickey).
fatal: Could not read from remote repository.
Please make sure you have the correct access rights and the repository
exists.

I also did something with my ssh key from here

https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform

but nothing happen.
Could you help me fixing this point ?
Many thanks. Best
Nicolas

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