[Bioc-devel] failing update Bioconductor package psygenet2r

Mon Mar 5 22:08:52 CET 2018

Dear Valerie,

Thank you so much for all your help.
I have configured my config file to point the key, there was a
misspelling problem.
I think I have updated correctly to Bioconductor know.

Thanks for all your help,

Best,

Alba

2018-03-05 8:47 GMT-05:00 Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org>:

> Please remember to cc bioc-devel to keep the conversation on the list.
>
> This is the key we have on file:
> ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7Jg+
> xuxkNlyi4JgTz6dtgDHH4uFStB34puUKSTBwlEmVR269XTB1uNVAmBWQIxZQ
> tFybGFMdS6fyA7A9mLeEvgJFIJP7wgXYh4ekzF72Ya/1cOLw4GJyPM6ImNfYC7GRJ8fVkd4Jt
> oiRSRaxJAkd0HY7JUAjexiBq2XAvUq+lY52E8H9ShZae8lvxUK2zFWZHpPEjH
> gXm5QZlzbUVYXlUUe09OaeKLAJz6cDMI4HLhKrtKdsRTyo05keU2P9Hursw9jSOp4ODAbuTN+
> LGTvxspVeLDzeJ4mlpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/
>
> Have you configured your .ssh/config to point to this key? See #15 here:
>
> https://bioconductor.org/developers/how-to/git/faq/
>
> Valerie
>
>
>
>
> On 03/03/2018 02:22 PM, alba gutierrez wrote:
>
> Dear Valerie,
>
> Thanks for all your help.
> I have solved the upstream issue, so know when I do: git remove -v I get
> the next:
>
>
>
> *origin https://github.com/aGutierrezSacristan/psygenet2r
> <https://github.com/aGutierrezSacristan/psygenet2r> (fetch) *
>
> *origin https://github.com/aGutierrezSacristan/psygenet2r
> <https://github.com/aGutierrezSacristan/psygenet2r> (push)*
>
> *upstream git at git.bioconductor.org:packages/psygenet2r.git
> <git at git.bioconductor.org:packages/psygenet2r.git> (fetch)*
>
> *upstream git at git.bioconductor.org:packages/psygenet2r.git
> <git at git.bioconductor.org:packages/psygenet2r.git> (push)*
>
>
>
> *I have done a minimal change in the vignette, updating my email account
> in order to try to do a push. I can do the git push origin master without
> problems but I still cannot do the git fetch upstream, that is what I
> should run to update the package in Bioconductor. I still get the same
> error message.  *
>
>
> *git at git.bioconductor.org <git at git.bioconductor.org>: Permission denied
> (publickey).*
>
>
>
> * fatal: Could not read from remote repository. Please make sure you have
> the correct access rights and the repository exists. *I am doing my best
> but I do not know how to solve this.
> Sorry again.
>
> Best,
>
> Alba
>
> 2018-03-03 17:03 GMT-05:00 Obenchain, Valerie <Valerie.Obenchain@
> roswellpark.org>:
>
>> On 03/03/2018 01:41 PM, alba gutierrez wrote:
>>
>> Dear Valerie,
>>
>> I have one additional question.
>> Although I appear as maintainer the package has two authors, and my
>> colleague Carles Hernandez-Ferrer, the other co-author is the one that used
>> to do all the updates.
>> Is there any possibility to add him as maintainer and that both of us
>> could update the package whenever needed? It would help a lot.
>>
>>
>> Yes he can be added but you need to make a request on bioc_devel. Briefly
>> explain why they need access. If he has not already, Carles will need to
>> submit ssh keys via the google doc.
>>
>> Valerie
>>
>>
>>
>>
>>
>>
>> Best,
>>
>> Alba
>>
>>
>>
>> 2018-03-03 9:31 GMT-05:00 alba gutierrez <alba.gutierrez at upf.edu>:
>>
>>> Dear Valerie,
>>>
>>> Sorry for my delay answering.
>>> Thank you for your help.
>>> There is any other documentation that could help me to do that? I do not
>>> know how to change the upstream pointing to my package instead of
>>> Biocgenerics.
>>>
>>> Thank you so much for all your help!
>>>
>>> Best,
>>>
>>> Alba
>>>
>>> 2018-02-26 10:44 GMT-05:00 Obenchain, Valerie <
>>> Valerie.Obenchain at roswellpark.org>:
>>>
>>>> The upstream points to BiocGenerics. My guess is that you followed the
>>>> example in the documentation too closely. You want to set the upstream to
>>>> point to your package (psygenet2r) not to BiocGenerics.
>>>>
>>>> Valerie
>>>>
>>>>
>>>>
>>>>
>>>> On 02/23/2018 01:44 PM, alba gutierrez wrote:
>>>>
>>>> Hi Valerie,
>>>>
>>>> Thanks for your answer.
>>>> The key is correct.
>>>> The output of git remote -V is:
>>>>
>>>> *origin https://github.com/aGutierrezSacristan/psygenet2r.git
>>>> <https://github.com/aGutierrezSacristan/psygenet2r.git> (fetch)*
>>>>
>>>> *origin https://github.com/aGutierrezSacristan/psygenet2r.git
>>>> <https://github.com/aGutierrezSacristan/psygenet2r.git> (push)*
>>>>
>>>> *upstream git at git.bioconductor.org:packages/BiocGenerics.git
>>>> <git at git.bioconductor.org:packages/BiocGenerics.git> (fetch)*
>>>>
>>>> *upstream git at git.bioconductor.org:packages/BiocGenerics.git
>>>> <git at git.bioconductor.org:packages/BiocGenerics.git> (push)*
>>>>
>>>> I don't know why it is not working.
>>>>
>>>> Thank you so much for your help,
>>>>
>>>> Best,
>>>>
>>>> Alba
>>>>
>>>> 2018-02-23 22:22 GMT+01:00 Obenchain, Valerie <
>>>> Valerie.Obenchain at roswellpark.org>:
>>>>
>>>>> Hi Alba,
>>>>>
>>>>> We have one key for a.gutierrez-sacristan:
>>>>>
>>>>> ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7J...VeLDzeJ4m
>>>>> lpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/
>>>>>
>>>>> If this is the key you're using you should have access. What is the
>>>>> output of
>>>>>
>>>>> git remote -v
>>>>>
>>>>> Valerie
>>>>>
>>>>>
>>>>> On 02/23/2018 09:16 AM, alba gutierrez wrote:
>>>>>
>>>>> Dear all,
>>>>>
>>>>> I am writing to you because I have some problems to update my
>>>>> package psygenet2r. After submitting my ssh-key and waiting to have the
>>>>> confirmation email I have been following the instructions herehttp://bioconductor.org/developers/how-to/git/maintain-github-bioc/
>>>>>
>>>>> All steps work without any problem and as expected according to the web.
>>>>> But in step 7 I get this error:
>>>>>
>>>>> "
>>>>>
>>>>> git fetch upstream
>>>>>
>>>>> git at git.bioconductor.org
>>>>> : Permission denied (publickey).
>>>>>
>>>>> fatal: Could not read from remote repository.
>>>>>
>>>>> "
>>>>>
>>>>>
>>>>> Could anyone help me with that?
>>>>>
>>>>>
>>>>> Thanks a lot,
>>>>>
>>>>>
>>>>> Best,
>>>>>
>>>>>
>>>>> Alba
>>>>>
>>>>> 	[[alternative HTML version deleted]]
>>>>>
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>>>>>
>>>>>
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>>>>
>>>>
>>>>
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>>
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>
>
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