[Bioc-devel] Git error when pushing to bioconductor

[Turaga, Nitesh]

Hi Divy,

It might be possible that you did not resolve all the conflicts you have.

Generally, a `git status` will show you all the conflict  files which are needed to be cleaned up by the merge. When you do a clean conflict resolution, you will be able to push cleanly to git.bioconductor.org. 

Did you follow http://bioconductor.org/developers/how-to/git/resolve-conflicts/?

Please send me the output of following that document above.

Best

Nitesh



> On Jun 3, 2018, at 10:55 PM, Kangeyan, Divy <divyswar01 using g.harvard.edu> wrote:
> 
> Hi Lori,
>            When I try Git pull upstream master, I get an error saying
> *Automatic
> merge failed; fix conflicts and then commit results*. When I fix the
> conflict and push it I get the same error as in my previous email. I have
> attached the full error message when I pull the upstream master branch here.
> 
> Thank you,
> Divy
> 
> On Sun, Jun 3, 2018 at 9:28 PM, Shepherd, Lori <
> Lori.Shepherd using roswellpark.org> wrote:
> 
>> Have you tried doing a 'git pull upstream master' ?  Do you get any
>> messages when running that command?
>> 
>> Generally try the following and post any error messages:
>> Git pull upstream master
>> ( resolve any merge conflicts and commit )
>> ( make any additional changes and commit)
>> Git push upstream master
>> 
>> 
>> Lori Shepherd
>> Bioconductor Core Team
>> Roswell Park Cancer Institute
>> Department of Biostatistics & Bioinformatics
>> Elm & Carlton Streets
>> Buffalo, New York 14263
>> ------------------------------
>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
>> Kangeyan, Divy <divyswar01 using g.harvard.edu>
>> *Sent:* Sunday, June 3, 2018 4:07:48 PM
>> *To:* Bioc-devel using r-project.org
>> *Subject:* [Bioc-devel] Git error when pushing to bioconductor
>> 
>> Hi,
>>    I maintain the scmeth package in bioconductor. Recently I made some
>> changes to the packages in my local branch and when I tried pushing it to
>> the bioconductor I got an error saying (Updates were rejected because the
>> tip of your current branch is behind its remote counterpart). I have
>> attached the screenshot.
>> 
>> I tried resolving the conflict manually and after that when I pushed the
>> changes I still got the same error. Any help with resolving the error is
>> greatly appreciated.
>> 
>> Thank you,
>> Divy Kangeyan
>> 
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> 
> 
> 
> -- 
> Thank you,
> Divy Kangeyan
> <https://www.linkedin.com/profile/preview?vpa=pub&locale=en_US>
> <https://divyup.wordpress.com>  <https://www.flickr.com/photos/divyagash/>
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