[Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

[James W. MacDonald]

Well, there's this:

Package Archives

Follow Installation
<https://bioconductor.org/install/#install-bioconductor-packages> instructions
to use this package in your R session.
And the link for the Installation instructions directs you to the page that
says to use biocLite.

Jim



On Tue, Jul 31, 2018 at 10:59 AM, Shepherd, Lori <
Lori.Shepherd using roswellpark.org> wrote:

> Yes DropletUtils has a release and a devel page; as most of the
> Bioconductor package do. The devel pages have been updated for the
> BiocManager while the release still are BiocInstaller.
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Tim Triche, Jr. <tim.triche using gmail.com>
> Sent: Tuesday, July 31, 2018 10:26:31 AM
> To: Shepherd, Lori
> Cc: bioc-devel
> Subject: Re: EXTERNAL: [Bioc-devel] introducing BiocManager in devel
> package pages?
>
> Now I am wondering about my sanity... it seems like perhaps DropletUtils
> has a release package page too?  In any event, looks like things are all
> set.
>
> thanks!
>
> --t
>
>
> On Tue, Jul 31, 2018 at 9:21 AM Shepherd, Lori <
> Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>>
> wrote:
>
> Where exactly did you see this?  It will be up to the package maintainers
> to update their package documentation (vignettes and such).  We have
> updated the devel package landing pages to include the new BiocManager
> instructions already:
>
>
> https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:
> bioc-devel-bounces using r-project.org>> on behalf of Tim Triche, Jr. <
> tim.triche using gmail.com<mailto:tim.triche using gmail.com>>
> Sent: Tuesday, July 31, 2018 9:14:24 AM
> To: bioc-devel
> Subject: EXTERNAL: [Bioc-devel] introducing BiocManager in devel package
> pages?
>
> So I was looking at DropletUtils and stumbled on this:
>
> To install this package, start R and enter:
>
> ## try http:// if https:// URLs are not supported
> source("https://bioconductor.org/biocLite.R")
> biocLite("DropletUtils")
>
>
> It seems like maybe devel might be a sensible place to start migrating
> users to BiocManager::install(...).  Thoughts?
>
> --t
>
>         [[alternative HTML version deleted]]
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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