[Bioc-devel] EXTERNAL: Re: Synching version numbers went wrong

[Turaga, Nitesh]

Hi Shana,

It seems that this occurred because of a merge gone bad and then followed by a series of version changes which are wrong.

I’ll just fix your version number to (1.7.2) for now and it’s your responsibility to sync again with your Github.

Best,

Nitesh 



> On Jul 30, 2018, at 5:51 AM, Mike Smith <grimbough using gmail.com> wrote:
> 
> Hi Shana,
> 
> Sorry for the delay in replying - I've been on vacation.  I tested this
> with one of my own packages and found the same problem.  I'm not sure how
> you managed to commit the lower version number in the first place (I'm not
> going to test that since I'll get stuck too!) but I guess the logic for
> allowing commits has a loophole somewhere.  I'll raise a query in the Slack
> channel and hopefully someone with power over the git repository will get
> back to you soon.
> 
> Mike
> 
> On Mon, 23 Jul 2018 at 21:20, White, Shana (vandersm) <vandersm using mail.uc.edu>
> wrote:
> 
>> Hi Mike,
>> 
>> 
>> My colleague and I have spent a few hours attempting to fix this problem;
>> we can only propogate changes with version numbers 1.5x and cannot do 1.6x
>> or 1.7x on the devel branch - it seems like the  Bioconductor automatic
>> checks are preventing us from updating the files and at this point we
>> believe the version number can only be fixed from within Bioconductor.
>> Does the Bioconductor team need to manually change the version number or
>> should we try to force push the changes ourselves? Please let me know if
>> you need any additional details.
>> 
>> 
>> Best,
>> 
>> 
>> 
>> Shana White
>> Ph. D Candidate  - Biostatistics + Bioinformatics
>> <https://med.uc.edu/eh/divisions/bio>
>> Predoctoral Fellow - MECEH
>> <https://med.uc.edu/eh/divisions/epi/programs/meceh>
>> Room 318 Kettering Labs
>> vandersm using mail.uc.edu
>> 937-657-8289
>> 
>> 
>> ------------------------------
>> *From:* Mike Smith <grimbough using gmail.com>
>> *Sent:* Thursday, July 12, 2018 4:57:55 AM
>> *To:* White, Shana (vandersm)
>> *Cc:* bioc-devel
>> *Subject:* Re: [Bioc-devel] Synching version numbers went wrong
>> 
>> Hi Shana,
>> 
>> It looks like the release version of KEGGlincs is 1.6.x and the devel
>> version should be 1.7.x.    When you're committing to the master branch of
>> git.bioconductor.org this equates to the devel version and there's a
>> check in place to prevent even version numbers being committed here.  My
>> recommendation is to make sure that your DESCRIPTION file for that commit
>> has a version number of 1.7.x which should put things back on track.
>> 
>> If you also need to add your changes to the release version (I guess the
>> current build error means you do) then you can see the instructions at
>> https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>> Step 4 details incorporating changes from one branch to another, and then
>> you need to manually make sure the DESCRIPTION file for committing to the
>> RELEASE_3_7 branch contains a 1.6.x version number.
>> 
>> Mike
>> 
>> On Wed, 11 Jul 2018 at 18:19, White, Shana (vandersm) <
>> vandersm using mail.uc.edu> wrote:
>> 
>> Hello, when attempting to fix a bug [introduced into my package] and
>> propagate the changes I somehow managed to roll back the middle version
>> number on one of my branches and ended up with the following error message
>> when attempting to correct my mistake:
>> 
>> 
>> 
>> Error message:
>> 
>> 
>> shanas-macbook:KEGGlincs shanabanana$ git push upstream master
>> 
>> Counting objects: 3, done.
>> 
>> Delta compression using up to 4 threads.
>> 
>> Compressing objects: 100% (3/3), done.
>> 
>> Writing objects: 100% (3/3), 298 bytes | 0 bytes/s, done.
>> 
>> Total 3 (delta 2), reused 0 (delta 0)
>> 
>> remote: Error: Illegal version bump from '1.5.1' to '1.6.1'. Check
>> 
>> remote: http://bioconductor.org/developers/how-to/version-numbering/
>> 
>> remote: for details
>> 
>> 
>> Many thanks,
>> 
>> 
>> Shana White
>> Ph. D Candidate  - Biostatistics + Bioinformatics<
>> https://med.uc.edu/eh/divisions/bio>
>> Predoctoral Fellow - MECEH<
>> https://med.uc.edu/eh/divisions/epi/programs/meceh>
>> Room 318 Kettering Labs
>> vandersm using mail.uc.edu
>> 937-657-8289
>> 
>> 
>>        [[alternative HTML version deleted]]
>> 
>> _______________________________________________
>> Bioc-devel using r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
>> 
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.