[Bioc-devel] ClusterSignificance version number

Jason Serviss j@@on@@ervi@@ @ending from ki@@e
Tue Jul 10 11:46:11 CEST 2018


Thanks for your quick response! Ok, it was the fact that https://git.bioconductor.org/packages/ClusterSignificance is devel by default that was not clear to me (potentially obvious in hindsight). Thanks for clearing this up!

Kind Regards,

On 10 Jul 2018, at 11:41, Shepherd, Lori <Lori.Shepherd using RoswellPark.org<mailto:Lori.Shepherd using RoswellPark.org>> wrote:

There is no problem with the versions.

The master branch is the devel branch -  and the DESCRIPTION on our git server is 1.9.0
The RELEASE_3_7 branch is the release 3.7 branch - and the DESCRIPTION on our git serve is 1.8.0

When you clone the repository git clone https://git.bioconductor.org/packages/ClusterSignificance  By default you are in the master (devel) branch.  So it would show the description as 1.9.0  unless you checkout the release branch. See:

Your downloaded tar was from release (hence the 3.7/bioc  and the 1.8.0 version)

The devel tar that shows 1.9.0 would  be from 3.8

Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Jason Serviss <jason.serviss using ki.se<mailto:jason.serviss using ki.se>>
Sent: Tuesday, July 10, 2018 5:06:59 AM
To: bioc-devel
Subject: [Bioc-devel] ClusterSignificance version number


I maintain the ClusterSignificance package which recently encountered a build fail. While investigating the problem I noticed that it would seem that there is an issue with the version numbering (quite possibly my fault). Both the master and RELEASE_3_7 branches were bumped to version 1.9.0 on April 30th although it would seem, per Bioconductor convention, that the RELEASE_3_7 branch should have version 1.8.0. Cloning from the git repo (git clone https://git.bioconductor.org/packages/ClusterSignificance), the DESCRIPTION file shows version 1.9.0 but if I download the Source Package (ClusterSignificance_1.8.0.tar.gz<https://master.bioconductor.org/packages/3.7/bioc/src/contrib/ClusterSignificance_1.8.0.tar.gz>) version 1.8.0 is listed in the DESCRIPTION file. Could someone from Bioconductor please have a look at this and let me know if/what steps I need to take to fix this or if there is just some sort of misunderstanding on my part?

Kind Regards,
Jason Serviss

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