[Bioc-devel] Vignettes location in BiocCheck vs R CMD check

[Kasper Daniel Hansen]

Put the bib file in /vignettes.  Perhaps see a couple of packages for
examples, including how to use BiocStyle

On Mon, Jan 29, 2018 at 3:26 PM, Armen Abnousi <a.abnousi at gmail.com> wrote:

> Thanks for your answers, that helped but now there is another issue. The
> vignette in vignettes/ directory is referring to a bib file for references.
> The bib file is in the inst/ directory (so I have used
> ../inst/REFERENCES.bib) to point to it. I don't get any warnings on my
> Linux computer when running check and BiocCheck. But when I submit the
> package it builds on Mac OS with no errors but on Linux it gives the error
>
> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
> :
>   there is no package called bibtex
>
> Is this related to my referencing to the bib file? How could I solve this
> issue. I appreciate your help.
>
> Thanks!
>
> On Mon, Jan 29, 2018 at 11:49 AM, Diego Morais <arthur.vinx at gmail.com>
> wrote:
>
> > Hello, Armen.
> >
> > Your vignettes should be located in <packagename> / vignettes. The
> > vignette will be built automatically later.
> >
> > 2018-01-29 16:41 GMT-03:00 Armen Abnousi <a.abnousi at gmail.com>:
> >
> >> Hi,
> >>
> >> I'm trying to submit my first package. but I'm confused about the
> location
> >> of the vignettes in my submitted package. It seems like BiocCheck is
> >> expecting the vignettes to go in <packagename>/vignettes directory but R
> >> 3.2+ expects them to go in <packagename>/inst/doc directory. Wherever I
> >> put
> >> them, one of the checks complains about their location. Can't put them
> in
> >> both directories either.
> >>
> >> Thanks,
> >> Armen
> >>
> >>         [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> >
> >
> >
> > --
> > Atenciosamente,
> > Diego Arthur de Azevedo Morais
> >
>
>         [[alternative HTML version deleted]]
>
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