[Bioc-devel] Vignettes location in BiocCheck vs R CMD check

Armen Abnousi a.abnousi at gmail.com
Mon Jan 29 21:26:40 CET 2018

Thanks for your answers, that helped but now there is another issue. The
vignette in vignettes/ directory is referring to a bib file for references.
The bib file is in the inst/ directory (so I have used
../inst/REFERENCES.bib) to point to it. I don't get any warnings on my
Linux computer when running check and BiocCheck. But when I submit the
package it builds on Mac OS with no errors but on Linux it gives the error

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
  there is no package called bibtex

Is this related to my referencing to the bib file? How could I solve this
issue. I appreciate your help.


On Mon, Jan 29, 2018 at 11:49 AM, Diego Morais <arthur.vinx at gmail.com>

> Hello, Armen.
> Your vignettes should be located in <packagename> / vignettes. The
> vignette will be built automatically later.
> 2018-01-29 16:41 GMT-03:00 Armen Abnousi <a.abnousi at gmail.com>:
>> Hi,
>> I'm trying to submit my first package. but I'm confused about the location
>> of the vignettes in my submitted package. It seems like BiocCheck is
>> expecting the vignettes to go in <packagename>/vignettes directory but R
>> 3.2+ expects them to go in <packagename>/inst/doc directory. Wherever I
>> put
>> them, one of the checks complains about their location. Can't put them in
>> both directories either.
>> Thanks,
>> Armen
>>         [[alternative HTML version deleted]]
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> --
> Atenciosamente,
> Diego Arthur de Azevedo Morais

	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list