[Bioc-devel] os X Build Error and Java

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Thu Feb 15 13:21:54 CET 2018

Java 8 is installed on the Bioconductor build machines

merida2:~ biocbuild$ java -version
java version "1.8.0_111"
Java(TM) SE Runtime Environment (build 1.8.0_111-b14)
Java HotSpot(TM) 64-Bit Server VM (build 25.111-b14, mixed mode)

The CRAN binaries for R3.5 are not yet available for some of the dependency packages.  When CRAN releases those binaries the ERRORs should be rectified.  If the package is building OK for malbec2 and tokay2, you can ignore the ERROR on merida2 for now.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Mattia Chiesa <mattia.chiesa at hotmail.it>
Sent: Thursday, February 15, 2018 4:34:06 AM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] os X Build Error and Java

Dear all,
I am the maintainer of the DaMiRseq package. For several days, my package is in ERROR status, only for merida2 (OS X 10.11.6 El Capitan / x86_64) in the devel release. I tried to trace the error back and I found out that the problem was due to the RWeka/Rwekajars packages.
I contacted the RWeka author and he kindly suggested to update the java version (java 8) in mer​ida2 (OS X 10.11.6 El Capitan / x86_64).
Could it be feasible?

Thanks in advance,

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