[Bioc-devel] Pushing to upstream master

[Anand MT]

Hi Nitesh,

I have checked my remotes, they are fine. 

$ git remote -v
origin	https://github.com/PoisonAlien/maftools.git (fetch)
origin	https://github.com/PoisonAlien/maftools.git (push)
upstream	git using git.bioconductor.org:packages/maftools.git (fetch)
upstream	git using git.bioconductor.org:packages/maftools.git (push)

I had no issues earlier pushing to master/release branch (in earlier releases).  

I also did a fresh pull on a new branch, I still have the same issue.

$ git branch devel
$ git checkout devel
Switched to branch 'devel'
$ git pull upstream master
From git.bioconductor.org:packages/maftools
* branch            master     -> FETCH_HEAD
Auto-merging DESCRIPTION
CONFLICT (content): Merge conflict in DESCRIPTION
Automatic merge failed; fix conflicts and then commit the result.
$ vi DESCRIPTION 
*fixed conflict*
$ git add .
$ git commit -m "version bump"
[devel 6e4dcbd] version bump
$ git push upstream master
To git.bioconductor.org:packages/maftools.git
! [rejected]        master -> master (non-fast-forward)
error: failed to push some refs to 'git using git.bioconductor.org:packages/maftools.git'
hint: Updates were rejected because a pushed branch tip is behind its remote
hint: counterpart. Check out this branch and integrate the remote changes
hint: (e.g. 'git pull ...') before pushing again.
hint: See the 'Note about fast-forwards' in 'git push --help' for details.

Thanks.

-Anand.

> On 17 Dec 2018, at 6:50 PM, Turaga, Nitesh <Nitesh.Turaga using roswellpark.org> wrote:
> 
> I need more information to help you. 
> 
> Please check http://bioconductor.org/developers/how-to/git/faq/, #14 especially.  And any others you may need.
> 
>> On Dec 17, 2018, at 12:46 PM, Anand MT <anand_mt using hotmail.com> wrote:
>> 
>> Hi Nitesh,
>> 
>> Yes, I have pulled from upstream but still the same issue.
>> 
>> $ git pull upstream master
>> From git.bioconductor.org:packages/maftools
>> * branch            master     -> FETCH_HEAD
>> Already up to date.
>> 
>> $ git status
>> On branch devel
>> nothing to commit, working tree clean
>> 
>> $ git push upstream master
>> To git.bioconductor.org:packages/maftools.git
>> ! [rejected]        master -> master (non-fast-forward)
>> error: failed to push some refs to 'git using git.bioconductor.org:packages/maftools.git'
>> hint: Updates were rejected because a pushed branch tip is behind its remote
>> hint: counterpart. Check out this branch and integrate the remote changes
>> hint: (e.g. 'git pull ...') before pushing again.
>> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
>> 
>> 
>> 
>>> On 17 Dec 2018, at 5:43 PM, Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org> wrote:
>>> 
>>> Hi,
>>> 
>>> Have your tried the command mentioned in the error message 
>>> 
>>> 	git pull 
>>> 
>>> 
>>> This is important. 
>>> 
>>> Once that is done, “IF” you have merge conflicts, please do
>>> 
>>> 	http://bioconductor.org/developers/how-to/git/resolve-conflicts/
>>> 
>>> Best,
>>> 
>>> Nitesh 
>>> 
>>>> On Dec 17, 2018, at 10:22 AM, Anand MT <anand_mt using hotmail.com> wrote:
>>>> 
>>>> Hi all,
>>>> 
>>>> I maintain maftools bioconductor package. I recently fixed several bugs which had resulted in build fail on devel branch of Bioconductor. However, I am unable to push them to upstream master. I have gone through help pages on Bioconductor page as well several other solutions online but I am not able to fix it. Please accept my apologies in advance if this has been already discussed before. 
>>>> 
>>>> Below are my git commands and error:
>>>> 
>>>> $ git branch devel
>>>> $ git checkout devel
>>>> Switched to branch 'devel'
>>>> $ git fetch upstream
>>>> $ git merge upstream/master
>>>> Auto-merging DESCRIPTION
>>>> CONFLICT (content): Merge conflict in DESCRIPTION
>>>> Automatic merge failed; fix conflicts and then commit the result.
>>>> $ vi DESCRIPTION 
>>>> Fixed merge conflict
>>>> $ git add .
>>>> $ git commit -m "bug fixes"
>>>> $ git status
>>>> On branch devel
>>>> nothing to commit, working tree clean
>>>> $ git push upstream master
>>>> To git.bioconductor.org:packages/maftools.git
>>>> ! [rejected]        master -> master (non-fast-forward)
>>>> error: failed to push some refs to 'git using git.bioconductor.org:packages/maftools.git'
>>>> hint: Updates were rejected because a pushed branch tip is behind its remote
>>>> hint: counterpart. Check out this branch and integrate the remote changes
>>>> hint: (e.g. 'git pull ...') before pushing again.
>>>> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
>>>> 
>>>> Could you please suggest me on how to proceed.
>>>> 
>>>> -Anand. 
>>>> _______________________________________________
>>>> Bioc-devel using r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>> 
>>> 
>>> 
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>> 
> 
> 
> 
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