[Bioc-devel] Pushing to upstream master

[Turaga, Nitesh]

I need more information to help you. 

Please check http://bioconductor.org/developers/how-to/git/faq/, #14 especially.  And any others you may need.

> On Dec 17, 2018, at 12:46 PM, Anand MT <anand_mt using hotmail.com> wrote:
> 
> Hi Nitesh,
> 
> Yes, I have pulled from upstream but still the same issue.
> 
> $ git pull upstream master
> From git.bioconductor.org:packages/maftools
> * branch            master     -> FETCH_HEAD
> Already up to date.
> 
> $ git status
> On branch devel
> nothing to commit, working tree clean
> 
> $ git push upstream master
> To git.bioconductor.org:packages/maftools.git
> ! [rejected]        master -> master (non-fast-forward)
> error: failed to push some refs to 'git using git.bioconductor.org:packages/maftools.git'
> hint: Updates were rejected because a pushed branch tip is behind its remote
> hint: counterpart. Check out this branch and integrate the remote changes
> hint: (e.g. 'git pull ...') before pushing again.
> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
> 
> 
> 
>> On 17 Dec 2018, at 5:43 PM, Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org> wrote:
>> 
>> Hi,
>> 
>> Have your tried the command mentioned in the error message 
>> 
>> 	git pull 
>> 
>> 
>> This is important. 
>> 
>> Once that is done, “IF” you have merge conflicts, please do
>> 
>> 	http://bioconductor.org/developers/how-to/git/resolve-conflicts/
>> 
>> Best,
>> 
>> Nitesh 
>> 
>>> On Dec 17, 2018, at 10:22 AM, Anand MT <anand_mt using hotmail.com> wrote:
>>> 
>>> Hi all,
>>> 
>>> I maintain maftools bioconductor package. I recently fixed several bugs which had resulted in build fail on devel branch of Bioconductor. However, I am unable to push them to upstream master. I have gone through help pages on Bioconductor page as well several other solutions online but I am not able to fix it. Please accept my apologies in advance if this has been already discussed before. 
>>> 
>>> Below are my git commands and error:
>>> 
>>> $ git branch devel
>>> $ git checkout devel
>>> Switched to branch 'devel'
>>> $ git fetch upstream
>>> $ git merge upstream/master
>>> Auto-merging DESCRIPTION
>>> CONFLICT (content): Merge conflict in DESCRIPTION
>>> Automatic merge failed; fix conflicts and then commit the result.
>>> $ vi DESCRIPTION 
>>> Fixed merge conflict
>>> $ git add .
>>> $ git commit -m "bug fixes"
>>> $ git status
>>> On branch devel
>>> nothing to commit, working tree clean
>>> $ git push upstream master
>>> To git.bioconductor.org:packages/maftools.git
>>> ! [rejected]        master -> master (non-fast-forward)
>>> error: failed to push some refs to 'git using git.bioconductor.org:packages/maftools.git'
>>> hint: Updates were rejected because a pushed branch tip is behind its remote
>>> hint: counterpart. Check out this branch and integrate the remote changes
>>> hint: (e.g. 'git pull ...') before pushing again.
>>> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
>>> 
>>> Could you please suggest me on how to proceed.
>>> 
>>> -Anand. 
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
>> 
>> 
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