[Bioc-devel] BioC 3.9 devel builds

[Pages, Herve]

Hi Michael,

I don't think we have any package that require C++14 at the moment.

I see 36 software packages that have SystemRequirements: C++11 in devel. I agree that package authors should probably stick to that and avoid C++14 for now.

The change I made to the build system is just a minor improvement to the following pages:

  https://bioconductor.org/checkResults/3.9/bioc-LATEST/malbec2-NodeInfo.html

  https://bioconductor.org/checkResults/3.9/bioc-LATEST/tokay2-NodeInfo.html

  https://bioconductor.org/checkResults/3.9/bioc-LATEST/merida2-NodeInfo.html

Right now the old obsolete CXX1X* config variables are still displayed. With my change the new ones (CXX11*) will be displayed. Since I was on it, I also added the CXX98* and CXX14* variables, for the sake of completeness/transparency. All these new variables should become visible tomorrow.

H.


On 12/17/18 10:09, Michael Lawrence wrote:

Dear Val/Herve:

Does this mean that Bioconductor depends on C++14? Keeping up with the C++
standards is a struggle, at least for those maintaining deployments on
clusters with slow-moving enterprise linux distributions.

It would be helpful if someone could document the minimum C++ standard,
along with the minimum gcc/clang version.

Thanks,
Michael

On Mon, Dec 17, 2018 at 10:03 AM Obenchain, Valerie <
Valerie.Obenchain using roswellpark.org<mailto:Valerie.Obenchain using roswellpark.org>> wrote:



Hi,

Just a heads up that we won't have a build report for 3.9 today. Herve
made some changes to the build report to display the C++14 compilation
flags and I messed up the deployment. Tomorrow we should be back on
track with the report and the new C++14 flags.

Sorry for the inconvenience.

Valerie


This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.
_______________________________________________
Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=1cOapRCMuM_U6xw1BIgue3cbftszOZ3MUNfznzsl7iE&s=ZCpB3AWWMv5G33UJ11s1zJfNw05_kaFCuJeJHgCrTwg&e=





        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=1cOapRCMuM_U6xw1BIgue3cbftszOZ3MUNfznzsl7iE&s=ZCpB3AWWMv5G33UJ11s1zJfNw05_kaFCuJeJHgCrTwg&e=


--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org<mailto:hpages using fredhutch.org>
Phone:  (206) 667-5791
Fax:    (206) 667-1319


	[[alternative HTML version deleted]]