[Bioc-devel] GenomicFeatures export request

[Leonardo Collado Torres]

Awesome, thanks Hervé!

Best,
Leo

On Wed, Dec 5, 2018 at 1:55 PM Pages, Herve <hpages using fredhutch.org> wrote:

> Hi Leo,
>
> This is done in GenomicFeatures 1.35.4:
>
>
> https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa
>
> Cheers,
>
> H.
>
>
> On 11/15/18 09:25, Leonardo Collado Torres wrote:
> > Hi Hervé,
> >
> > Looking into the details of GenomicFeatures::exonicParts() I see that
> > this function runs GenomicFeatures:::.tidy_exons(). Would it be
> > possible to export this function? Looks like it'll be useful for some
> > work we are doing.
> >
> > We can start using it without the function being exported, and well,
> > if you prefer not to export it we could still use it in other packages
> > (though a NOTE will show up in R CMD check).
> >
> > I don't think that we'll use GenomicFeatures:::.tidy_transcripts()
> > directly although GenomicFeatures:::.tidy_exons() runs it. But well,
> > maybe other users might be interested in your tidy set of functions.
> >
> > Best,
> > Leo
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages using fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>
>

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