[Bioc-devel] DMRcaller build error

[Radu Zabet]

Thank you for that Herve!

I managed to figure out what the problem was.

I was using a GRangesList constructor and,  when validating the argument
passed to the function, I was checking if the class was GRangesList instead
of CompressedGRangesList.

Radu

On Fri, Apr 27, 2018 at 8:11 PM, Hervé Pagès <hpages at fredhutch.org> wrote:

> Hi Radu,
>
> DMRcaller is all green on today's report:
>
>   https://bioconductor.org/checkResults/3.7/bioc-LATEST/DMRcaller/
>
> Remember that after you update (and push to git.bioconductor.org) you
> need to wait at least 18h before the update is visible on the build
> report. 18h is if you pushed right before the builds start (the software
> builds start every day at 4:45 pm EST). If you push right after the
> builds start then you will need to wait 42h!
>
> Cheers,
> H.
>
> On 04/20/2018 07:47 AM, Radu Zabet wrote:
>
>> Hi everyone,
>>
>> I am the maintainer of DMRcaller. I did an update yesterday and on the
>> build report today, the package failed with the error.
>>
>> Error: processing vignette 'DMRcaller.Rnw' failed with diagnostics:
>>   methylationProfile needs to be a GRangesList
>> Execution halted
>>
>>
>> On my machine (MacOS with R 3.4.4) it works
>>
>> * creating vignettes ... OK
>>
>> Any suggestion of why this might happen? Is there something I am missing?
>>
>> Radu
>>
>>
>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Canc
> <https://maps.google.com/?q=Fred+Hutchinson+Canc&entry=gmail&source=g>er
> Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>



-- 
Best regards,

Dr Nicolae Radu Zabet
Lecturer in Computational Biology,
School of Biological Sciences, University of Essex,
Colchester, CO4 3SQ, United Kingdom
T: +44(0)1206872630
E: nzabet at essex.ac.uk

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