[Bioc-devel] DMRcaller build error

Hervé Pagès hpages at fredhutch.org
Fri Apr 27 21:11:54 CEST 2018

Hi Radu,

DMRcaller is all green on today's report:


Remember that after you update (and push to git.bioconductor.org) you
need to wait at least 18h before the update is visible on the build
report. 18h is if you pushed right before the builds start (the software
builds start every day at 4:45 pm EST). If you push right after the
builds start then you will need to wait 42h!


On 04/20/2018 07:47 AM, Radu Zabet wrote:
> Hi everyone,
> I am the maintainer of DMRcaller. I did an update yesterday and on the
> build report today, the package failed with the error.
> Error: processing vignette 'DMRcaller.Rnw' failed with diagnostics:
>   methylationProfile needs to be a GRangesList
> Execution halted
> On my machine (MacOS with R 3.4.4) it works
> * creating vignettes ... OK
> Any suggestion of why this might happen? Is there something I am missing?
> Radu

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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E-mail: hpages at fredhutch.org
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