[Bioc-devel] Need some help to submit a R package.
Shepherd, Lori
Lori.Shepherd at RoswellPark.org
Fri Apr 27 14:18:23 CEST 2018
I am able to open this link. Perhaps it was an intermittent internet connection issue? Are you able to open the link now?
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Pijush Das <topijush at gmail.com>
Sent: Friday, April 27, 2018 7:06:07 AM
To: Morgan, Martin
Cc: Shepherd, Lori; bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Need some help to submit a R package.
Dear Sir,
I have found some problem in github link given below:
https://github.com/Bioconductor/Contributions/issues/713
The link is not opening. Is there any problem in github repository?
Please check it.
Thank you
regards
Pijush
On Thu, Apr 26, 2018 at 2:32 PM, Martin Morgan <martin.morgan at roswellpark.org<mailto:martin.morgan at roswellpark.org>> wrote:
Wait for the reviewer to comment further on your package.
On 04/26/2018 02:20 AM, Pijush Das wrote:
Dear Sir,
I have found that my package sigFeature had passed all the built test without errors or warnings
on all platforms.
What should I do next ?
regards
Pijush
On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori <Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org> <mailto:Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>>> wrote:
It doesn't look like the webhook was ever initialized
Please follow the instructions here:
https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook
<https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook>
After the webhook is set up you will need to do another version bump
to trigger the build - Please post further correspondence regarding
your package submission on the open github issue
https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------------------
*From:* Pijush Das <topijush at gmail.com<mailto:topijush at gmail.com> <mailto:topijush at gmail.com<mailto:topijush at gmail.com>>>
*Sent:* Tuesday, April 24, 2018 11:33:14 AM
*To:* Shepherd, Lori
*Cc:* Morgan, Martin; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
<mailto:bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
*Subject:* Re: [Bioc-devel] Need some help to submit a R package.
Dear sir,
I have uploaded the sigFeature package ( Version: 0.99.1) in the
existing git repository and did a version bump. The link is given below.
https://github.com/pijush1285/sigFeature
<https://github.com/pijush1285/sigFeature>
But still now I am not getting any response.
Is there required to add the web hook again ?
Thank you
regards
Pijush
On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori
<Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>
<mailto:Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>>> wrote:
We like to keep track of the changes and have the reviews in one
place. If possible it would be better to replace the contents
of existing git repository and do a version bump.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>
<mailto:bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>>> on behalf of Pijush
Das <topijush at gmail.com<mailto:topijush at gmail.com> <mailto:topijush at gmail.com<mailto:topijush at gmail.com>>>
*Sent:* Tuesday, April 24, 2018 7:43:04 AM
*To:* Morgan, Martin
*Cc:* bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <mailto:bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
*Subject:* Re: [Bioc-devel] Need some help to submit a R package.
Dear Sir,
I have solved most of the issues raised by the reviewers.
There were significant amount of changes in the original code.
So should we submit our package (sigFeature) as a new submission
or replace the contents of existing git repository with version
increment.
regards
Pijush
On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
martin.morgan at roswellpark.org<mailto:martin.morgan at roswellpark.org>
<mailto:martin.morgan at roswellpark.org<mailto:martin.morgan at roswellpark.org>>> wrote:
> If you are still having problems understanding warnings, it is probably
> better to use the github issue -- it may take some time to get an answer,
> because the reviewers have many responsibilities.
>
> It looks like your 'webhook' is not correct, and that you are not changing
> the version of your package (from 0.99.0 to 0.99.1, 0.99.2, ...) when you
> wish to generate another build report. @grimbough indicated in the github
> issue how to address these problems.
>
> Martin
>
>
> On 04/16/2018 03:58 AM, Pijush Das wrote:
>
>> Dear Ruqian,
>>
>>
>> Yes sir, I have opened the build report which is a link to an HTML page
>> with details.
>> But I unable to understand why the WARNING massages are showing.
>>
>> Three days before the other reviewers had made some comments and asked me
>> to address
>> those issues and also told me to solve the NOTEs produced by BioCheck.
>>
>> Presently I am working on the sigFeature package to address those issues.
>> I shall communicate soon after solving those issues.
>>
>>
>> Thank you
>>
>>
>> Regards
>> Pijush
>>
>>
>>
>> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>> ruqianl at student.unimelb.edu.au<mailto:ruqianl at student.unimelb.edu.au>
<mailto:ruqianl at student.unimelb.edu.au<mailto:ruqianl at student.unimelb.edu.au>>>
>> wrote:
>>
>> Hi Pijush,
>>>
>>> Did you open the build report which is a link to an HTML page with
>>> details
>>> of the warning?
>>>
>>>
>>> Regards,
>>> Ruqian
>>>
>>>
>>>
>>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <topijush at gmail.com<mailto:topijush at gmail.com> <mailto:topijush at gmail.com<mailto:topijush at gmail.com>>> wrote:
>>>
>>> Dear Sir,
>>>>
>>>>
>>>> I have submitted an R package named "sigFeature" in Github and also
>>>> Bioconductor 9 days before.
>>>> The reviewers only said that there is some WARNING problem in the
>>>> package
>>>> in different platform.
>>>>
>>>> But after that they are not communicating any thing regarding the
>>>> package.
>>>> I have checked the package
>>>> windows and Ubuntu it is working fine.
>>>>
>>>> I unable to understand what actually the problem is ?
>>>> And the reviewers are not communicating about the problem. Though I am
>>>> getting lots of email from bioc-devel dealing with others package
>>>> problem .
>>>>
>>>> Please suggest me what should I do now ?
>>>>
>>>>
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>> Regards
>>>> Pijush
>>>>
>>>>
>>>>
>>>>
>>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>>>> Nitesh.Turaga at roswellpark.org<mailto:Nitesh.Turaga at roswellpark.org>
<mailto:Nitesh.Turaga at roswellpark.org<mailto:Nitesh.Turaga at roswellpark.org>>> wrote:
>>>>
>>>> Hi,
>>>>>
>>>>> Please read through this documentation.
>>>>>
>>>>> http://bioconductor.org/developers/package-submission/
<http://bioconductor.org/developers/package-submission/>
>>>>>
>>>>>
>>>>> Nitesh
>>>>>
>>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com<mailto:topijush at gmail.com> <mailto:topijush at gmail.com<mailto:topijush at gmail.com>>> wrote:
>>>>>>
>>>>>> Dear Sir,
>>>>>>
>>>>>>
>>>>>>
>>>>>> I have developed an R package. I want to submit this package in
>>>>>> Bioconductor.
>>>>>> Please help me to submit the R package.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> regards
>>>>>> Pijush Das
>>>>>>
>>>>>> [[alternative HTML version deleted]]
>>>>>>
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