[Bioc-devel] Need some help to submit a R package.

Pijush Das topijush at gmail.com
Fri Apr 27 13:06:07 CEST 2018


Dear Sir,


I have found some problem in github link given below:
https://github.com/Bioconductor/Contributions/issues/713
The link is not opening. Is there any problem in github repository?
Please check it.


Thank you


regards
Pijush







On Thu, Apr 26, 2018 at 2:32 PM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:

> Wait for the reviewer to comment further on your package.
>
> On 04/26/2018 02:20 AM, Pijush Das wrote:
>
>> Dear Sir,
>>
>>
>> I have found that my package sigFeature had passed all the built test
>> without errors or warnings
>> on all platforms.
>> What should I do next ?
>>
>>
>>
>>
>>
>> regards
>> Pijush
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori <
>> Lori.Shepherd at roswellpark.org <mailto:Lori.Shepherd at roswellpark.org>>
>> wrote:
>>
>>     It doesn't look like the webhook was ever initialized
>>
>>
>>     Please follow the instructions here:
>>
>>     https://github.com/Bioconductor/Contributions/blob/master/
>> CONTRIBUTING.md#adding-a-web-hook
>>     <https://github.com/Bioconductor/Contributions/blob/master/
>> CONTRIBUTING.md#adding-a-web-hook>
>>
>>     After the webhook is set up you will need to do another version bump
>>     to trigger the build -  Please post further correspondence regarding
>>     your package submission on the open github issue
>>
>>
>>     https://github.com/Bioconductor/Contributions/issues/713
>>     <https://github.com/Bioconductor/Contributions/issues/713>
>>
>>
>>     Lori Shepherd
>>
>>     Bioconductor Core Team
>>
>>     Roswell Park Cancer Institute
>>
>>     Department of Biostatistics & Bioinformatics
>>
>>     Elm & Carlton Streets
>>
>>     Buffalo, New York 14263
>>
>>     ------------------------------------------------------------
>> ------------
>>     *From:* Pijush Das <topijush at gmail.com <mailto:topijush at gmail.com>>
>>     *Sent:* Tuesday, April 24, 2018 11:33:14 AM
>>     *To:* Shepherd, Lori
>>     *Cc:* Morgan, Martin; bioc-devel at r-project.org
>>     <mailto:bioc-devel at r-project.org>
>>
>>     *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>>     Dear sir,
>>
>>
>>     I have uploaded the sigFeature package ( Version: 0.99.1) in the
>>     existing git repository and did a version bump. The link is given
>> below.
>>     https://github.com/pijush1285/sigFeature
>>     <https://github.com/pijush1285/sigFeature>
>>       But still now I am not getting any response.
>>     Is there required to add the web hook again ?
>>
>>     Thank you
>>
>>     regards
>>     Pijush
>>
>>
>>
>>     On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori
>>     <Lori.Shepherd at roswellpark.org
>>     <mailto:Lori.Shepherd at roswellpark.org>> wrote:
>>
>>         We like to keep track of the changes and have the reviews in one
>>         place.   If possible it would be better to replace the contents
>>         of existing git repository and do a version bump.
>>
>>
>>         Lori Shepherd
>>
>>         Bioconductor Core Team
>>
>>         Roswell Park Cancer Institute
>>
>>         Department of Biostatistics & Bioinformatics
>>
>>         Elm & Carlton Streets
>>
>>         Buffalo, New York 14263
>>
>>         ------------------------------------------------------------
>> ------------
>>         *From:* Bioc-devel <bioc-devel-bounces at r-project.org
>>         <mailto:bioc-devel-bounces at r-project.org>> on behalf of Pijush
>>         Das <topijush at gmail.com <mailto:topijush at gmail.com>>
>>         *Sent:* Tuesday, April 24, 2018 7:43:04 AM
>>         *To:* Morgan, Martin
>>         *Cc:* bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>
>>         *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>>         Dear Sir,
>>
>>         I have solved most of the issues raised by the reviewers.
>>         There were significant amount of changes in the original code.
>>         So should we submit our package (sigFeature) as a new submission
>>         or replace the contents of existing git repository with version
>>         increment.
>>
>>
>>         regards
>>         Pijush
>>
>>
>>         On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
>>         martin.morgan at roswellpark.org
>>         <mailto:martin.morgan at roswellpark.org>> wrote:
>>
>>         > If you are still having problems understanding warnings, it is
>> probably
>>         > better to use the github issue -- it may take some time to get
>> an answer,
>>         > because the reviewers have many responsibilities.
>>         >
>>         > It looks like your 'webhook' is not correct, and that you are
>> not changing
>>         > the version of your package (from 0.99.0 to 0.99.1, 0.99.2,
>> ...) when you
>>         > wish to generate another build report. @grimbough indicated in
>> the github
>>         > issue how to address these problems.
>>         >
>>         > Martin
>>         >
>>         >
>>         > On 04/16/2018 03:58 AM, Pijush Das wrote:
>>         >
>>         >> Dear  Ruqian,
>>         >>
>>         >>
>>         >> Yes sir, I have opened the build report which is a link to an
>> HTML page
>>         >> with details.
>>         >> But I unable to understand why the WARNING massages are
>> showing.
>>         >>
>>         >> Three days before the other reviewers had made some comments
>> and asked me
>>         >> to address
>>         >> those issues and also told me to solve the NOTEs produced by
>> BioCheck.
>>         >>
>>         >> Presently I am working on the sigFeature package to address
>> those issues.
>>         >> I shall communicate soon after solving those issues.
>>         >>
>>         >>
>>         >> Thank you
>>         >>
>>         >>
>>         >> Regards
>>         >> Pijush
>>         >>
>>         >>
>>         >>
>>         >> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>>         >> ruqianl at student.unimelb.edu.au
>>         <mailto:ruqianl at student.unimelb.edu.au>>
>>         >> wrote:
>>         >>
>>         >> Hi Pijush,
>>         >>>
>>         >>> Did you open the build report which is a link to an HTML page
>> with
>>         >>> details
>>         >>> of the warning?
>>         >>>
>>         >>>
>>         >>> Regards,
>>         >>> Ruqian
>>         >>>
>>         >>>
>>         >>>
>>         >>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <
>> topijush at gmail.com <mailto:topijush at gmail.com>> wrote:
>>         >>>
>>         >>> Dear Sir,
>>         >>>>
>>         >>>>
>>         >>>> I have submitted an R package named "sigFeature" in Github
>> and also
>>         >>>> Bioconductor 9 days before.
>>         >>>> The reviewers only said that there is some WARNING problem
>> in the
>>         >>>> package
>>         >>>> in different platform.
>>         >>>>
>>         >>>> But after that they are not communicating any thing
>> regarding the
>>         >>>> package.
>>         >>>> I have checked the package
>>         >>>> windows and Ubuntu it is working fine.
>>         >>>>
>>         >>>> I unable to understand what actually the problem is ?
>>         >>>> And the reviewers are not communicating about the problem.
>> Though I am
>>         >>>> getting lots of email from bioc-devel dealing with others
>> package
>>         >>>> problem .
>>         >>>>
>>         >>>> Please suggest me what should I do now ?
>>         >>>>
>>         >>>>
>>         >>>>
>>         >>>>
>>         >>>> Thank you
>>         >>>>
>>         >>>>
>>         >>>>
>>         >>>> Regards
>>         >>>> Pijush
>>         >>>>
>>         >>>>
>>         >>>>
>>         >>>>
>>         >>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>>         >>>> Nitesh.Turaga at roswellpark.org
>>         <mailto:Nitesh.Turaga at roswellpark.org>> wrote:
>>         >>>>
>>         >>>> Hi,
>>         >>>>>
>>         >>>>> Please read through this documentation.
>>         >>>>>
>>         >>>>> http://bioconductor.org/developers/package-submission/
>>         <http://bioconductor.org/developers/package-submission/>
>>         >>>>>
>>         >>>>>
>>         >>>>> Nitesh
>>         >>>>>
>>         >>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com
>> <mailto:topijush at gmail.com>> wrote:
>>         >>>>>>
>>         >>>>>> Dear Sir,
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>> I have developed an R package. I want to submit this
>> package in
>>         >>>>>> Bioconductor.
>>         >>>>>> Please help me to submit the R package.
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>>
>>         >>>>>> regards
>>         >>>>>> Pijush Das
>>         >>>>>>
>>         >>>>>>        [[alternative HTML version deleted]]
>>         >>>>>>
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