[Bioc-devel] Need some help to submit a R package.
Pijush Das
topijush at gmail.com
Fri Apr 27 13:06:07 CEST 2018
Dear Sir,
I have found some problem in github link given below:
https://github.com/Bioconductor/Contributions/issues/713
The link is not opening. Is there any problem in github repository?
Please check it.
Thank you
regards
Pijush
On Thu, Apr 26, 2018 at 2:32 PM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:
> Wait for the reviewer to comment further on your package.
>
> On 04/26/2018 02:20 AM, Pijush Das wrote:
>
>> Dear Sir,
>>
>>
>> I have found that my package sigFeature had passed all the built test
>> without errors or warnings
>> on all platforms.
>> What should I do next ?
>>
>>
>>
>>
>>
>> regards
>> Pijush
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori <
>> Lori.Shepherd at roswellpark.org <mailto:Lori.Shepherd at roswellpark.org>>
>> wrote:
>>
>> It doesn't look like the webhook was ever initialized
>>
>>
>> Please follow the instructions here:
>>
>> https://github.com/Bioconductor/Contributions/blob/master/
>> CONTRIBUTING.md#adding-a-web-hook
>> <https://github.com/Bioconductor/Contributions/blob/master/
>> CONTRIBUTING.md#adding-a-web-hook>
>>
>> After the webhook is set up you will need to do another version bump
>> to trigger the build - Please post further correspondence regarding
>> your package submission on the open github issue
>>
>>
>> https://github.com/Bioconductor/Contributions/issues/713
>> <https://github.com/Bioconductor/Contributions/issues/713>
>>
>>
>> Lori Shepherd
>>
>> Bioconductor Core Team
>>
>> Roswell Park Cancer Institute
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>>
>> ------------------------------------------------------------
>> ------------
>> *From:* Pijush Das <topijush at gmail.com <mailto:topijush at gmail.com>>
>> *Sent:* Tuesday, April 24, 2018 11:33:14 AM
>> *To:* Shepherd, Lori
>> *Cc:* Morgan, Martin; bioc-devel at r-project.org
>> <mailto:bioc-devel at r-project.org>
>>
>> *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>> Dear sir,
>>
>>
>> I have uploaded the sigFeature package ( Version: 0.99.1) in the
>> existing git repository and did a version bump. The link is given
>> below.
>> https://github.com/pijush1285/sigFeature
>> <https://github.com/pijush1285/sigFeature>
>> But still now I am not getting any response.
>> Is there required to add the web hook again ?
>>
>> Thank you
>>
>> regards
>> Pijush
>>
>>
>>
>> On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori
>> <Lori.Shepherd at roswellpark.org
>> <mailto:Lori.Shepherd at roswellpark.org>> wrote:
>>
>> We like to keep track of the changes and have the reviews in one
>> place. If possible it would be better to replace the contents
>> of existing git repository and do a version bump.
>>
>>
>> Lori Shepherd
>>
>> Bioconductor Core Team
>>
>> Roswell Park Cancer Institute
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>>
>> ------------------------------------------------------------
>> ------------
>> *From:* Bioc-devel <bioc-devel-bounces at r-project.org
>> <mailto:bioc-devel-bounces at r-project.org>> on behalf of Pijush
>> Das <topijush at gmail.com <mailto:topijush at gmail.com>>
>> *Sent:* Tuesday, April 24, 2018 7:43:04 AM
>> *To:* Morgan, Martin
>> *Cc:* bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>
>> *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>> Dear Sir,
>>
>> I have solved most of the issues raised by the reviewers.
>> There were significant amount of changes in the original code.
>> So should we submit our package (sigFeature) as a new submission
>> or replace the contents of existing git repository with version
>> increment.
>>
>>
>> regards
>> Pijush
>>
>>
>> On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
>> martin.morgan at roswellpark.org
>> <mailto:martin.morgan at roswellpark.org>> wrote:
>>
>> > If you are still having problems understanding warnings, it is
>> probably
>> > better to use the github issue -- it may take some time to get
>> an answer,
>> > because the reviewers have many responsibilities.
>> >
>> > It looks like your 'webhook' is not correct, and that you are
>> not changing
>> > the version of your package (from 0.99.0 to 0.99.1, 0.99.2,
>> ...) when you
>> > wish to generate another build report. @grimbough indicated in
>> the github
>> > issue how to address these problems.
>> >
>> > Martin
>> >
>> >
>> > On 04/16/2018 03:58 AM, Pijush Das wrote:
>> >
>> >> Dear Ruqian,
>> >>
>> >>
>> >> Yes sir, I have opened the build report which is a link to an
>> HTML page
>> >> with details.
>> >> But I unable to understand why the WARNING massages are
>> showing.
>> >>
>> >> Three days before the other reviewers had made some comments
>> and asked me
>> >> to address
>> >> those issues and also told me to solve the NOTEs produced by
>> BioCheck.
>> >>
>> >> Presently I am working on the sigFeature package to address
>> those issues.
>> >> I shall communicate soon after solving those issues.
>> >>
>> >>
>> >> Thank you
>> >>
>> >>
>> >> Regards
>> >> Pijush
>> >>
>> >>
>> >>
>> >> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>> >> ruqianl at student.unimelb.edu.au
>> <mailto:ruqianl at student.unimelb.edu.au>>
>> >> wrote:
>> >>
>> >> Hi Pijush,
>> >>>
>> >>> Did you open the build report which is a link to an HTML page
>> with
>> >>> details
>> >>> of the warning?
>> >>>
>> >>>
>> >>> Regards,
>> >>> Ruqian
>> >>>
>> >>>
>> >>>
>> >>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <
>> topijush at gmail.com <mailto:topijush at gmail.com>> wrote:
>> >>>
>> >>> Dear Sir,
>> >>>>
>> >>>>
>> >>>> I have submitted an R package named "sigFeature" in Github
>> and also
>> >>>> Bioconductor 9 days before.
>> >>>> The reviewers only said that there is some WARNING problem
>> in the
>> >>>> package
>> >>>> in different platform.
>> >>>>
>> >>>> But after that they are not communicating any thing
>> regarding the
>> >>>> package.
>> >>>> I have checked the package
>> >>>> windows and Ubuntu it is working fine.
>> >>>>
>> >>>> I unable to understand what actually the problem is ?
>> >>>> And the reviewers are not communicating about the problem.
>> Though I am
>> >>>> getting lots of email from bioc-devel dealing with others
>> package
>> >>>> problem .
>> >>>>
>> >>>> Please suggest me what should I do now ?
>> >>>>
>> >>>>
>> >>>>
>> >>>>
>> >>>> Thank you
>> >>>>
>> >>>>
>> >>>>
>> >>>> Regards
>> >>>> Pijush
>> >>>>
>> >>>>
>> >>>>
>> >>>>
>> >>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>> >>>> Nitesh.Turaga at roswellpark.org
>> <mailto:Nitesh.Turaga at roswellpark.org>> wrote:
>> >>>>
>> >>>> Hi,
>> >>>>>
>> >>>>> Please read through this documentation.
>> >>>>>
>> >>>>> http://bioconductor.org/developers/package-submission/
>> <http://bioconductor.org/developers/package-submission/>
>> >>>>>
>> >>>>>
>> >>>>> Nitesh
>> >>>>>
>> >>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com
>> <mailto:topijush at gmail.com>> wrote:
>> >>>>>>
>> >>>>>> Dear Sir,
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>> I have developed an R package. I want to submit this
>> package in
>> >>>>>> Bioconductor.
>> >>>>>> Please help me to submit the R package.
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>> regards
>> >>>>>> Pijush Das
>> >>>>>>
>> >>>>>> [[alternative HTML version deleted]]
>> >>>>>>
>> >>>>>> _______________________________________________
>> >>>>>> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
>> mailing list
>> >>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
>> >>>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> This email message may contain legally privileged and/or
>> confidential
>> >>>>> information. If you are not the intended recipient(s), or
>> the employee
>> >>>>>
>> >>>> or
>> >>>>
>> >>>>> agent responsible for the delivery of this message to the
>> intended
>> >>>>> recipient(s), you are hereby notified that any disclosure,
>> copying,
>> >>>>> distribution, or use of this email message is prohibited.
>> If you have
>> >>>>> received this message in error, please notify the sender
>> immediately by
>> >>>>> e-mail and delete this email message from your computer.
>> Thank you.
>> >>>>>
>> >>>>>
>> >>>> [[alternative HTML version deleted]]
>> >>>>
>> >>>> _______________________________________________
>> >>>> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
>> mailing list
>> >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
>> >>>>
>> >>>>
>> >>>
>> >>>
>> >> [[alternative HTML version deleted]]
>> >>
>> >> _______________________________________________
>> >> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
>> mailing list
>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
>> >>
>> >>
>> >
>> > This email message may contain legally privileged and/or
>> confidential
>> > information. If you are not the intended recipient(s), or the
>> employee or
>> > agent responsible for the delivery of this message to the
>> intended
>> > recipient(s), you are hereby notified that any disclosure,
>> copying,
>> > distribution, or use of this email message is prohibited. If
>> you have
>> > received this message in error, please notify the sender
>> immediately by
>> > e-mail and delete this email message from your computer. Thank
>> you.
>> >
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
>> mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
>>
>> This email message may contain legally privileged and/or
>> confidential information. If you are not the intended
>> recipient(s), or the employee or agent responsible for the
>> delivery of this message to the intended recipient(s), you are
>> hereby notified that any disclosure, copying, distribution, or
>> use of this email message is prohibited. If you have received
>> this message in error, please notify the sender immediately by
>> e-mail and delete this email message from your computer. Thank
>> you.
>>
>>
>>
>> This email message may contain legally privileged and/or
>> confidential information. If you are not the intended recipient(s),
>> or the employee or agent responsible for the delivery of this
>> message to the intended recipient(s), you are hereby notified that
>> any disclosure, copying, distribution, or use of this email message
>> is prohibited. If you have received this message in error, please
>> notify the sender immediately by e-mail and delete this email
>> message from your computer. Thank you.
>>
>>
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
>
[[alternative HTML version deleted]]
More information about the Bioc-devel
mailing list