[Bioc-devel] Need some help to submit a R package.

Thu Apr 26 08:20:17 CEST 2018

Dear Sir,

I have found that my package sigFeature had passed all the built test
without errors or warnings
on all platforms.
What should I do next ?

regards
Pijush

On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:

> It doesn't look like the webhook was ever initialized
>
>
> Please follow the instructions here:
>
> https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#
> adding-a-web-hook
>
> After the webhook is set up you will need to do another version bump to
> trigger the build -  Please post further correspondence regarding your
> package submission on the open github issue
>
>
> https://github.com/Bioconductor/Contributions/issues/713
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Pijush Das <topijush at gmail.com>
> *Sent:* Tuesday, April 24, 2018 11:33:14 AM
> *To:* Shepherd, Lori
> *Cc:* Morgan, Martin; bioc-devel at r-project.org
>
> *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>
> Dear sir,
>
>
> I have uploaded the sigFeature package ( Version: 0.99.1) in the existing
> git repository and did a version bump. The link is given below.
> https://github.com/pijush1285/sigFeature
>  But still now I am not getting any response.
> Is there required to add the web hook again ?
>
> Thank you
>
> regards
> Pijush
>
>
>
> On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori <
> Lori.Shepherd at roswellpark.org> wrote:
>
> We like to keep track of the changes and have the reviews in one place.
>  If possible it would be better to replace the contents of existing git
> repository and do a version bump.
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Pijush
> Das <topijush at gmail.com>
> *Sent:* Tuesday, April 24, 2018 7:43:04 AM
> *To:* Morgan, Martin
> *Cc:* bioc-devel at r-project.org
> *Subject:* Re: [Bioc-devel] Need some help to submit a R package.
>
> Dear Sir,
>
> I have solved most of the issues raised by the reviewers.
> There were significant amount of changes in the original code.
> So should we submit our package (sigFeature) as a new submission
> or replace the contents of existing git repository with version increment.
>
>
> regards
> Pijush
>
>
> On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
> martin.morgan at roswellpark.org> wrote:
>
> > If you are still having problems understanding warnings, it is probably
> > better to use the github issue -- it may take some time to get an answer,
> > because the reviewers have many responsibilities.
> >
> > It looks like your 'webhook' is not correct, and that you are not
> changing
> > the version of your package (from 0.99.0 to 0.99.1, 0.99.2, ...) when you
> > wish to generate another build report. @grimbough indicated in the github
> > issue how to address these problems.
> >
> > Martin
> >
> >
> > On 04/16/2018 03:58 AM, Pijush Das wrote:
> >
> >> Dear  Ruqian,
> >>
> >>
> >> Yes sir, I have opened the build report which is a link to an HTML page
> >> with details.
> >> But I unable to understand why the WARNING massages are showing.
> >>
> >> Three days before the other reviewers had made some comments and asked
> me
> >> to address
> >> those issues and also told me to solve the NOTEs produced by BioCheck.
> >>
> >> Presently I am working on the sigFeature package to address those
> issues.
> >> I shall communicate soon after solving those issues.
> >>
> >>
> >> Thank you
> >>
> >>
> >> Regards
> >> Pijush
> >>
> >>
> >>
> >> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
> >> ruqianl at student.unimelb.edu.au>
> >> wrote:
> >>
> >> Hi Pijush,
> >>>
> >>> Did you open the build report which is a link to an HTML page with
> >>> details
> >>> of the warning?
> >>>
> >>>
> >>> Regards,
> >>> Ruqian
> >>>
> >>>
> >>>
> >>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <topijush at gmail.com>
> wrote:
> >>>
> >>> Dear Sir,
> >>>>
> >>>>
> >>>> I have submitted an R package named "sigFeature" in Github and also
> >>>> Bioconductor 9 days before.
> >>>> The reviewers only said that there is some WARNING problem in the
> >>>> package
> >>>> in different platform.
> >>>>
> >>>> But after that they are not communicating any thing regarding the
> >>>> package.
> >>>> I have checked the package
> >>>> windows and Ubuntu it is working fine.
> >>>>
> >>>> I unable to understand what actually the problem is ?
> >>>> And the reviewers are not communicating about the problem. Though I am
> >>>> getting lots of email from bioc-devel dealing with others package
> >>>> problem .
> >>>>
> >>>> Please suggest me what should I do now ?
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> Thank you
> >>>>
> >>>>
> >>>>
> >>>> Regards
> >>>> Pijush
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
> >>>> Nitesh.Turaga at roswellpark.org> wrote:
> >>>>
> >>>> Hi,
> >>>>>
> >>>>> Please read through this documentation.
> >>>>>
> >>>>> http://bioconductor.org/developers/package-submission/
> >>>>>
> >>>>>
> >>>>> Nitesh
> >>>>>
> >>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com> wrote:
> >>>>>>
> >>>>>> Dear Sir,
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> I have developed an R package. I want to submit this package in
> >>>>>> Bioconductor.
> >>>>>> Please help me to submit the R package.
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> regards
> >>>>>> Pijush Das
> >>>>>>
> >>>>>>        [[alternative HTML version deleted]]
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> Bioc-devel at r-project.org mailing list
> >>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>>>
> >>>>>
> >>>>>
> >>>>>
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> >>>>> information.  If you are not the intended recipient(s), or the
> employee
> >>>>>
> >>>> or
> >>>>
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> >>>>> received this message in error, please notify the sender immediately
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> >>>>>
> >>>>          [[alternative HTML version deleted]]
> >>>>
> >>>> _______________________________________________
> >>>> Bioc-devel at r-project.org mailing list
> >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>
> >>>>
> >>>
> >>>
> >>         [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> >>
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