[Bioc-devel] BiocCheck error

Aimin Yan aimin.at.work at gmail.com
Tue Apr 10 22:39:38 CEST 2018

I used "R CMD check PathwaySplice_1.3.0.tar.gz", and get it passed
without errors and warnings.

However I get the following error when I use "R CMD BiocCheck

R CMD BiocCheck PathwaySplice_1.3.0.tar.gz

This is BiocCheck version 1.15.8. BiocCheck is a work in progress.

Output and severity of issues may change. Installing package...

* Checking for version number mismatch...

* Checking if other packages can import this one...

* Checking to see if we understand object initialization...

    * NOTE: Consider clarifying how 12 object(s) are initialized. Maybe

      they are part of a data set loaded with data(), or perhaps part

      of an object referenced in with() or within().

    object (function)

      winMenuAddItem (.onAttach)

      ggplot (compareResults2)

      aes (compareResults2)

      random_sampling_200k (compareResults2)

      PValue (compareResults2)

      PathwaySplice (compareResults2)

      geom_point (compareResults2)

      geom_smooth (compareResults2)

      labs (compareResults2)

      scale_colour_manual (compareResults2)

      scale_shape_manual (compareResults2)

      get.col.scale (netplot)

* Checking vignette directory...

    This is a software package

Error in vapply(vigdircontents, vigHelper, logical(1), builder = desc) :

  values must be length 1,

 but FUN(X[[1]]) result is length 2

Calls: <Anonymous> ... BiocCheck -> checkVignetteDir -> checkVigBuilder ->

Execution halted

Any idea about this?

Here is my sessionInfo()


Thank you,


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