[Bioc-devel] No Windows binary for GenomicRanges

[Gordon K Smyth]

Thanks. I confirm that it installs for me now in R-3.5.0alpha for Windows.

Gordon

> -----Original Message-----
> From: Hervé Pagès <hpages at fredhutch.org>
> Sent: Thursday, 29 March 2018 3:42 PM
> To: Gordon K Smyth <smyth at wehi.edu.au>; bioc-devel at r-project.org
> Subject: Re: [Bioc-devel] No Windows binary for GenomicRanges
> 
> Hi Gordon,
> 
> The TIMEOUT that was preventing the Windows binary of GenomicRanges
> from propagating has been addressed. The latest version of the package
> (1.31.23) is now available for BioC devel users on all platforms via
> biocLite().
> 
> Cheers,
> H.
> 
> 
> On 03/19/2018 10:01 AM, Hervé Pagès wrote:
> > Hi Gordon,
> >
> > We're seeing a number of abnormal/unexpected TIMEOUTs on tokay2:
> >
> >
> > https://urldefense.proofpoint.com/v2/url?u=https-
> 3A__bioconductor.org_checkResults_3.7_bioc-2DLATEST_tokay2-2Dindex.html-
> 23show-
> 3Dtimeout&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=HjFin7ZZwuYWdlO8wv
> E3KmoPwjRiq-bV_UKHWdKLLP4&m=jWxbIgfo7qej-
> qcydrB9NnzlvmwboSkvQFAWN6Fca1g&s=wj8zdVvqh_ucm_lMqZOzC37n85vndqh
> vSfqgMTjTMOg&e=
> >
> >
> > These TIMEOUTs have been preventing the Windows binaries of the
> > corresponding packages to propagate. We're currently investigating
> > the cause of these TIMEOUTs and will let you know.
> >
> > Sorry for the inconvenience.
> >
> > H.
> >
> >
> > On 03/18/2018 07:35 PM, Gordon K Smyth wrote:
> >> There has been no Windows binary for the GenomicRanges package since
> >> version 1.31.12, which was nearly 2 months ago.
> >>
> >> This means that I can't install GenomicFeatures either, because it
> >> depends on a later version of GenomicRanges, so the whole Bioc ranges
> >> infrastructure is incapacitated.
> >>
> >> What is the ETA for a Windows version? I notice there haven't been any
> >> commits to GenomicRanges since 27 Feb.
> >>
> >> Gordon
> >>
> >> ------------------------------------------
> >> Professor Gordon K Smyth
> >> Head, Bioinformatics Division
> >> Walter and Eliza Hall Institute of Medical Research
> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://urldefense.proofpoint.com/v2/url?u=https-
> 3A__stat.ethz.ch_mailman_listinfo_bioc-
> 2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY
> _wJYbW0WYiZvSXAJJKaaPhzWA&m=NrBBRFv3CReEoWizyQHKlkyTU3dgJ1g0EEV
> frBK3-Io&s=QlSpRQkMeHpZXcbywJfyWc5ehC8aLRdx5oHlJsyVGDA&e=
> >>
> >>
> >
> 
> --
> Hervé Pagès
> 
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
> 
> E-mail: hpages at fredhutch.org
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