[Bioc-devel] failing Bioconductor package DeepBlueR

[Markus List]

Hi Nitesh,

Thanks for looking into it. Unfortunately, I still can't access the
repository since I was using a DSA key which was previously mentioned here
as not supported. I thus generated an RSA key and added it to github. Will
newly added github keys be automatically imported? If not could you please
add my new key (github username mlist).

Best,
Markus


On Fri, 8 Sep 2017 at 15:12 Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:

> Hi Markus,
>
> Your SSH key has been accepted, but you don’t have access to the
> repository because the SVN system did not know you have access rights to
> this package.
>
> I’ll give you access rights to that package.
>
> Best
>
> Nitesh
>
> > On Sep 8, 2017, at 7:34 AM, Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
> wrote:
> >
> >
> >
> > Lori Shepherd
> > Bioconductor Core Team
> > Roswell Park Cancer Institute
> > Department of Biostatistics & Bioinformatics
> > Elm & Carlton Streets
> > Buffalo, New York 14263
> >
> >
> > From: Markus List <markus.list at mpi-inf.mpg.de>
> > Sent: Friday, September 8, 2017 4:31 AM
> > To: Shepherd, Lori; Felipe Albrecht
> > Subject: Re: failing Bioconductor package DeepBlueR
> >
> > Dear Lori,
> >
> > Since Felipe is on vacation I wanted to look into this issue but I can
> not push any changes to the new git repository. I tried to get my SSH keys
> accepted twice (August 18 and 22) for this by submitting my github id in
> the google form you provide but I have not received any response in . Can
> you help me out? My github id is 'mlist'.
> >
> > Best,
> > Markus
> >
> >
> > --
> > Markus List
> > Postdoc, Computational Biology & Applied Algorithmics
> > Associate Editor, BMC Systems Biology
> > Max-Planck Institute for Informatics
> > Saarland Informatics Campus
> > Building E1.4, Room 516, 66123 Saarbrücken, Germany
> > E-mail: markus.list at mpi-inf.mpg.de
> > Phone: +49 681 93253016 <0681%2093253016>
> > Twitter: @itisalist
> >
> > On Thu, 7 Sep 2017 at 13:15 Shepherd, Lori <
> Lori.Shepherd at roswellpark.org> wrote:
> > Ok. Thank you very much for looking into this.
> >
> > Lori Shepherd
> > Bioconductor Core Team
> > Roswell Park Cancer Institute
> > Department of Biostatistics & Bioinformatics
> > Elm & Carlton Streets
> > Buffalo, New York 14263
> > From: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>
> > Sent: Thursday, September 7, 2017 2:30:10 AM
> > To: Shepherd, Lori; markus.list at mpi-inf.mpg.de
> >
> > Subject: Re: failing Bioconductor package DeepBlueR
> > Hello Lori,
> > Since the problem is only in the devel branch, I will fix this issue
> during next week because I'm out of office right now.
> >
> > Thank you for informing!
> > Felipe Albrecht
> >
> >
> >
> > --
> > Max Planck Institute for Informatics
> > Computational Biology and Applied Algorithmics Department
> > Campus E 1.4
> > Room 508
> > 66123 Saarbrücken
> > Germany
> > Phone: +49 (681) 9325 3008 <0681%2093253008>
> > Email:  felipe.albrecht at mpi-inf.mpg.de
> > http://felipealbrecht.github.io
> >
> > -------- Original message --------
> > From: "Shepherd, Lori" <Lori.Shepherd at RoswellPark.org>
> > Date: 06/09/2017 20:56 (GMT+09:00)
> > To: felipe.albrecht at mpi-inf.mpg.de, markus.list at mpi-inf.mpg.de
> > Subject: failing Bioconductor package DeepBlueR
> >
> > Dear DeepBlueR maintainer,
> >
> > I'd like to bring to your attention that the DeepBlueR package is
> failing to pass 'R CMD build' on all platforms in the devel version of
> Bioconductor (i.e. BioC 3.6):
> >
> >
> http://bioconductor.org/checkResults/3.6/bioc-LATEST/DeepBlueR/malbec1-buildsrc.html
> >
> > Would you mind taking a look at this? Don't hesitate to ask on the
> bioc-devel mailing list if you have any question or need help.
> >
> > If no action is taken over the next few weeks we will begin the
> deprecation process for your package.  Thank you for your time and effort.
> >
> >
> > Thanks for your contribution to Bioconductor.
> >
> > Pleae be advised that Bioconductor has switched from svn to Git. Some
> helpful
> > links can be found here:
> > https://bioconductor.org/developers/how-to/git/
> >
> >
> >
> > Lori Shepherd
> > Bioconductor Core Team
> > Roswell Park Cancer Institute
> > Department of Biostatistics & Bioinformatics
> > Elm & Carlton Streets
> > Buffalo, New York 14263
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