[Bioc-devel] Package update not showing on Bioc 3.6 webpage

Hervé Pagès hpages at fredhutch.org
Mon Oct 30 23:50:39 CET 2017

Hi Kushal,

If you push changes without bumping the version of your package,
the update won't propagate.

You only bumped the version to 1.5.1 today so you need to wait
about 24 hours before seeing this reflected on the landing page
for CountClust.

Also please note that you did the version bump plus a few other
commits (6 commits in total) in master today **after** we created
the RELEASE_3_6 branch so these changes will only propagate to
BioC 3.7 (the new devel version of BioC, starting tomorrow).
If you want these changes to also propagate to the BioC 3.6 release
you'll need to push them to the RELEASE_3_6 branch. This is
typically done with 'git cherry-pick' as documented here:



On 10/30/2017 02:41 PM, kushal kumar dey wrote:
> Hi all,
> I am the author and maintainer of the CountClust package. I recently
> submitted an update (version 1.5.1) to the package through
> Bioconductor Git  and I can access this updated version when I clone the
> source repository
> git clone https://urldefense.proofpoint.com/v2/url?u=https-3A__git.bioconductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaBn5X8-jb1yhm_GmSUWL6SIGLmo&e=
> However, the updated version is not available in the official Bioconductor
> 3.6 page, which still shows the version 1.3.0.
> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e=
> Can you please let me know if the page has not been updated for the
> packages yet or if I would need to do something at my end to update the
> version reported on the page?
> Thanks so much

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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