[Bioc-devel] Modeling (statistic, p-value) pairs in MultiAssayExperiment

Vincent Carey stvjc at channing.harvard.edu
Mon Oct 23 22:50:47 CEST 2017

no answers yet?  would it work to put your matrices as separate assays in a
as long as they are conformant in dimensions and dimnames I think that
would work.  That
SummarizedExperiment would then work well in an MAE.

On Mon, Oct 23, 2017 at 1:00 PM, Francesco Napolitano <franapoli at gmail.com>

> Hi,
> I'm trying to build a MultiAssayExperiment. However, in my case each
> assay should ideally include two matrices: one with a statistic and
> another one with the corresponding p-value. I'm currently managing
> each of them simply as a list of two matrices, but assay class expects
> table-like data. I must also be able to quickly extract entire rows or
> columns from each matrix.
> Is there a suitable way to model this into a MultiAssayExperiment?
> Thank you,
> Francesco
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