[Bioc-devel] EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X)

[Martin Morgan]

On 10/12/2017 07:08 AM, Ramon Diaz-Uriarte wrote:
> Dear All,
> 
> I have noticed that on the latest build report, a package I maintain,
> OncoSimulR
> (http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/veracruz1-buildsrc.html),

I wonder if it is this issue

   https://github.com/Bioconductor/BiocParallel/issues/67

which would occur if your vignette has parallel code (using 'fork' 
processed via parallel::mclapply or indirectly via 
BiocParallel::MulticoreParam() / doParallel etc.)

If so then the best strategy is to wait for an upstream fix.

Martin


> has status timeout on veracruz1. Package building stalls during
> creation of the vignette (that is not happening in the malbec1 ---linux---
> build). I have noticed that this same pattern (timeout with build stopped when
> creating the vignette in veracruz1 but not in malbec1) seems to affect
> other packages
> (http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout).
> 
> Is there anything we should do? Just looking at the log I do not know how
> to proceed.
> 
> 
> Thanks,
> 
> 
> R.
> 
> 
> 
> --
> Ramon Diaz-Uriarte
> Department of Biochemistry, Lab B-25
> Facultad de Medicina
> Universidad Autónoma de Madrid
> Arzobispo Morcillo, 4
> 28029 Madrid
> Spain
> 
> Phone: +34-91-497-2412
> 
> Email: rdiaz02 at gmail.com
>         ramon.diaz at iib.uam.es
> 
> http://ligarto.org/rdiaz
> 
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