[Bioc-devel] new package submission (pcxn) Abnormal build result

[Sokratis Kariotis]

Thanks for the reply!

For now I have commented out the problematic lines (# network <-
pcxn.network(df) , in man files and vignette) and the package builds OK.

Cheers,
Sokratis

On 5 October 2017 at 12:56, Shepherd, Lori <Lori.Shepherd at roswellpark.org>
wrote:

> Yes, this seems to be a problem on our side. We are looking into it. For
> now you can ignore this ERROR.
>
> There was a similar post here:
>
> https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011773.html
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
> Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
> *Sent:* Monday, October 2, 2017 8:07:12 AM
> *To:* Bioc-devel at r-project.org
> *Subject:* [Bioc-devel] new package submission (pcxn) Abnormal build
> result
>
> Hi all,
>
> Today I submitted a new package called "pcxn" in bioconductor and I got the
> following Abnormal built result:
>
> Warning in fun(libname, pkgname) :
>   no display name and no $DISPLAY environment variable
>
> Error: processing vignette 'usingPCxNdb.Rnw' failed with diagnostics:
>  chunk 4 (label = pcxn.network)
> Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
>   [tcl] invalid command name "font".
>
> The pcxn.network function uses igraph::tkplot to return a network, which
> works every time on several local machines. After searching for a while it
> seems that whenever this problem arises its because of the igraph package
> installation. How can I deal with this? Thanks in advance.
>
> With Regards,
> Sokratis
> --
> Sokratis Kariotis
> Scientific Programmer
> Hidelab
> Sheffield Institute for Translational Neuroscience
> 385a Glossop Rd, Sheffield, S10 2HQ
> <https://maps.google.com/?q=385a+Glossop+Rd,+Sheffield,+S10+2HQ&entry=gmail&source=g>
>
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-- 
Sokratis Kariotis
Scientific Programmer
Hidelab
Sheffield Institute for Translational Neuroscience
385a Glossop Rd, Sheffield, S10 2HQ

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