[Bioc-devel] new package submission (pcxn) Abnormal build result

[Shepherd, Lori]

Yes, this seems to be a problem on our side. We are looking into it. For now you can ignore this ERROR.

There was a similar post here:

https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011773.html


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Sent: Monday, October 2, 2017 8:07:12 AM
To: Bioc-devel at r-project.org
Subject: [Bioc-devel] new package submission (pcxn) Abnormal build result

Hi all,

Today I submitted a new package called "pcxn" in bioconductor and I got the
following Abnormal built result:

Warning in fun(libname, pkgname) :
  no display name and no $DISPLAY environment variable

Error: processing vignette 'usingPCxNdb.Rnw' failed with diagnostics:
 chunk 4 (label = pcxn.network)
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
  [tcl] invalid command name "font".

The pcxn.network function uses igraph::tkplot to return a network, which
works every time on several local machines. After searching for a while it
seems that whenever this problem arises its because of the igraph package
installation. How can I deal with this? Thanks in advance.

With Regards,
Sokratis
--
Sokratis Kariotis
Scientific Programmer
Hidelab
Sheffield Institute for Translational Neuroscience
385a Glossop Rd, Sheffield, S10 2HQ

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]