[Bioc-devel] new package submission (pcxn) Abnormal build result

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Thu Oct 5 13:56:12 CEST 2017

Yes, this seems to be a problem on our side. We are looking into it. For now you can ignore this ERROR.

There was a similar post here:


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Sent: Monday, October 2, 2017 8:07:12 AM
To: Bioc-devel at r-project.org
Subject: [Bioc-devel] new package submission (pcxn) Abnormal build result

Hi all,

Today I submitted a new package called "pcxn" in bioconductor and I got the
following Abnormal built result:

Warning in fun(libname, pkgname) :
  no display name and no $DISPLAY environment variable

Error: processing vignette 'usingPCxNdb.Rnw' failed with diagnostics:
 chunk 4 (label = pcxn.network)
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
  [tcl] invalid command name "font".

The pcxn.network function uses igraph::tkplot to return a network, which
works every time on several local machines. After searching for a while it
seems that whenever this problem arises its because of the igraph package
installation. How can I deal with this? Thanks in advance.

With Regards,
Sokratis Kariotis
Scientific Programmer
Sheffield Institute for Translational Neuroscience
385a Glossop Rd, Sheffield, S10 2HQ

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