[Bioc-devel] Organism.dplyr::supportedFilters warning

[Van Twisk, Daniel]

We've updated GSEABase on devel yesterday so that it should build correctly.  This will fix the warning that was being sent off by EnrichmentBrowser.  The changes may take a few days to propagate.

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Van Twisk, Daniel <Daniel.VanTwisk at RoswellPark.org>
Sent: Tuesday, October 3, 2017 3:08:36 PM
To: Lucas Schiffer; Ludwig Geistlinger
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Organism.dplyr::supportedFilters warning

A recent change that was made to GSEABase seems to be the source of the problem.  We're looking at it now.

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Lucas Schiffer <schiffer.lucas at gmail.com>
Sent: Tuesday, October 3, 2017 2:29:51 PM
To: Ludwig Geistlinger
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Organism.dplyr::supportedFilters warning

Hello,

I think this is related to GSEABase, I noticed this warning when updating packages today.

* installing *source* package 'GSEABase' ...
** R
** inst
** preparing package for lazy loading
Warning: no function found corresponding to methods exports from 'Organism.dplyr' for: 'supportedFilters'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: no function found corresponding to methods exports from 'Organism.dplyr' for: 'supportedFilters'
* DONE (GSEABase)

Perhaps GSEABase or Organism.dplyr needs a patch.

Thanks,

Lucas

> On Oct 3, 2017, at 10:54, Ludwig Geistlinger <Ludwig.Geistlinger at bio.ifi.lmu.de> wrote:
>
> Hi,
>
> R CMD check of the devel version of my package lately started to trigger a
> warning:
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/EnrichmentBrowser/malbec1-checksrc.html
>
>
> * checking whether package �EnrichmentBrowser� can be installed ... WARNING
> Found the following significant warnings:
>
> Warning: no function found corresponding to methods exports from
> �Organism.dplyr� for: �supportedFilters�
>
> See
> �/home/biocbuild/bbs-3.6-bioc/meat/EnrichmentBrowser.Rcheck/00install.out�
> for details.
>
> I am not quite sure how to deal with that.
> Any advice?
>
> Thanks,
> Ludwig
>
> --
> Dr. Ludwig Geistlinger
> eMail: Ludwig.Geistlinger at bio.ifi.lmu.de
>
>> Hi,
>>
>> This Friday, October 6, is the last day to submit new packages for
>> inclusion in BioC 3.6. Packages submitted by Friday still need to complete
>> the review process before the release but we'll do our best to get them
>> in. Packages submitted after the deadline will be included in the new
>> devel, BioC 3.7.
>>
>>  http://www.bioconductor.org/developers/release-schedule/
>>
>> Valerie
>>
>>
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>
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