[Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

[Hervé Pagès]

I didn't do anything and the file at the URL has not changed since last
time I checked it (more than 6h ago). As I said earlier it's not
uncommon to experience caching issues. It can help to restart your
browser to clear them. Downloading the file with wget or curl e.g.

   wget http://bioconductor.org/packages/devel/bioc/news/cbaf/NEWS

is also more likely to give you the current file. Unless the caching
problem is on the server side which is what happens sometimes with
Amazon CloudFront (in which case one needs to wait and re-try later).

Cheers,
H.


On 11/16/2017 09:49 AM, Arman Shahrisa wrote:
> It wasn’t changed when I sent the previous email. But after 1 hour,
>
> I noticed the change. The package was updated at Bioconductor website
>
> yesterday. It is not common for a single file to be corrected automatically
>
> after more than 24 hours has past. I thought you might have altered it
>
> manually. Since the problem was solved, I didn’t send any further email.
>
> Best regards,
> Arman Shahrisa
>
> ------------------------------------------------------------------------
> *From:* Hervé Pagès <hpages at fredhutch.org>
> *Sent:* Thursday, November 16, 2017 9:08:47 PM
> *To:* Arman Shahrisa; bioc-devel
> *Subject:* Re: [Bioc-devel] NEWS file hasn't been updated in the devel
> branch of package cbaf
> On 11/16/2017 05:15 AM, Arman Shahrisa wrote:
>> Hi Hervé,
>>
>> I can still see the old NEWS file over there. Maybe you have mistakenly
>> opened
>>
>> the stable branch (which is up to date and has no problem). My problem
>>
>> is with the devel branch. Even the NEWS file has the version of older
>> package.
>>
>> Maybe it is because of the error during package building. cbaf is not
>> available for
>>
>> windows and mac os because of a few of dependent packages that are not
>> available
>>
>> for R 3.5 yet.
>>
>>http://bioconductor.org/packages/devel/bioc/news/cbaf/NEWS
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_news_cbaf_NEWS&d=DwMF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=amG6RXzpG9x2hkXJ5mOnBaCq_-6Yz9IYYd92sZfnJF4&s=hMdh0gP5TGFx9zPLaU5ukstGmYLWIf0njnsTKdSc7ck&e=>
>
> The file at the above URL starts with
>
> cbaf 1.1.2 - 2017-11-14
> -------------------------
>
> Isn't that the new file?
>
> H.
>
>>
>>http://bioconductor.org/packages/devel/bioc/src/contrib/cbaf_1.1.2.tar.gz <https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_src_contrib_cbaf-5F1.1.2.tar.gz&d=DwMF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=amG6RXzpG9x2hkXJ5mOnBaCq_-6Yz9IYYd92sZfnJF4&s=uLnrYn0qmkXy6d92SeDVcNYZdzXaW8uO3qdL6pWVJ3s&e=>
>> Best regards,
>> Arman Shahrisa
>>
>> *From: *Hervé Pagès <mailto:hpages at fredhutch.org>
>> *Sent: *Thursday, November 16, 2017 14:53
>> *To: *Arman Shahrisa <mailto:shahrisa.arman at hotmail.com>; bioc-devel
>> <mailto:bioc-devel at r-project.org>
>> *Subject: *Re: [Bioc-devel] NEWS file hasn't been updated in the devel
>> branch of package cbaf
>>
>> Hi Arman,
>>
>> On 11/15/2017 01:08 PM, Arman Shahrisa wrote:
>>> Hi,
>>>
>>> I’m the maintainer of package cbaf. The last version of cbaf in devel branch is
>>> available at bioconductor.org. However, due to an unknown reason, the
>>> NEWS file hasn’t been updated to the newest version (It is from the previous
>>> version of cbaf). I manually downloaded the Source Package of cbaf from the
>>> following bioconductor web page and it contains the correct NEWS file.
>>>
>>>https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_html_cbaf.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=btyTSHdxI_K--g8D_jB6Sg_h7_06w1StseJhSqwekZ4&s=jzgj9FyzhsLlsL4CQ2QC5gK7tY6mNrGrG2UZKJKF1OE&e=
>>
>> AFAICT the NEWS file on this page is identical to the one in cbaf 1.1.2.
>>
>> FYI our website is served via Amazon CloudFront and there are sometimes
>> delay/caching issues. I'm frequently hit by those.
>>
>> Cheers,
>> H.
>>
>>>
>>> Best regards,
>>> Arman Shahrisa
>>>
>>>
>>>        [[alternative HTML version deleted]]
>>>
>>>
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>>https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=btyTSHdxI_K--g8D_jB6Sg_h7_06w1StseJhSqwekZ4&s=BBEbMys1mFJ85V0yPKT_cxqIkrFnO062bAQEhLn1BN4&e=
>>>
>>
>> --
>> Hervé Pagès
>>
>> Program in Computational Biology
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>>
>> E-mail: hpages at fredhutch.org
>> Phone:  (206) 667-5791
>> Fax:    (206) 667-1319
>>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319